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The map label for this gene is ywhC [H]

Identifier: 153937057

GI number: 153937057

Start: 579200

End: 579850

Strand: Direct

Name: ywhC [H]

Synonym: CLC_0569

Alternate gene names: 153937057

Gene position: 579200-579850 (Clockwise)

Preceding gene: 153937764

Following gene: 153936665

Centisome position: 15.4

GC content: 27.5

Gene sequence:

>651_bases
TTGGACTTAAACTATAGAATACTTTCGAAAATACTAATAATACCAGCTATATTAGTAGGCCTTACAGTACATGAATTTGC
TCATGCCTATGTAGCAGACAAATTAGGAGATAAAACTCCTAAATTTCAAGGAAGATTAACATTAAATCCCTTTTCACATA
TAGACATTATAGGTTTTATAATGATATTATTAATTGGATTTGGATGGGCAAAGCCAGTACAAATTAATCCAAGTGCATTA
AAAAGAGGATATAAAGATGAGATAAAAGTTTCTGTAGCAGGGGTAACTGCAAATGTAATTACAGCATTTTTATTTGCATT
ATTAACAGCTTTCTTGTTAAAGTTAAATTTAGTGAACTTTGGAGATATAACTTCCTTAGGTGGTATAATAGGTTTAATAT
TGAACTATATAGTTAGAATAAATTGTATGCTAGCAATATTTAATTTAATGCCTATACCAGGACTTGATGGCTTTGACATA
TTGAGAGATTTATGGCCTAAGACTTTTTATAAAATATCTGATGTAATTTATAGATATCAAATGATTATTCTATTGATATT
TGTGGTAACTCCTATTTCATCATTTTTAGTAGGAATTCCAACTAATTTTTTACATTATTCTTTTATGAAAATAGCTATGA
CTATATTTTAG

Upstream 100 bases:

>100_bases
AATATCTATTTATTTTATATTAATATTTATTTAATTGTTGTATTTATTTAAATTTGCTATAATTGTTTTGAAGTTTCAAT
TTTAGGAGAGGATGAGTTTT

Downstream 100 bases:

>100_bases
AATTTTAATTTTTTAATAAAAGTATAAAAATTAGATATTTATCGTATTAAAATTAAACTAGAAAAAGGTGATTTTTGTAT
TGTACAGAGGTCATCTTTTT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MDLNYRILSKILIIPAILVGLTVHEFAHAYVADKLGDKTPKFQGRLTLNPFSHIDIIGFIMILLIGFGWAKPVQINPSAL
KRGYKDEIKVSVAGVTANVITAFLFALLTAFLLKLNLVNFGDITSLGGIIGLILNYIVRINCMLAIFNLMPIPGLDGFDI
LRDLWPKTFYKISDVIYRYQMIILLIFVVTPISSFLVGIPTNFLHYSFMKIAMTIF

Sequences:

>Translated_216_residues
MDLNYRILSKILIIPAILVGLTVHEFAHAYVADKLGDKTPKFQGRLTLNPFSHIDIIGFIMILLIGFGWAKPVQINPSAL
KRGYKDEIKVSVAGVTANVITAFLFALLTAFLLKLNLVNFGDITSLGGIIGLILNYIVRINCMLAIFNLMPIPGLDGFDI
LRDLWPKTFYKISDVIYRYQMIILLIFVVTPISSFLVGIPTNFLHYSFMKIAMTIF
>Mature_216_residues
MDLNYRILSKILIIPAILVGLTVHEFAHAYVADKLGDKTPKFQGRLTLNPFSHIDIIGFIMILLIGFGWAKPVQINPSAL
KRGYKDEIKVSVAGVTANVITAFLFALLTAFLLKLNLVNFGDITSLGGIIGLILNYIVRINCMLAIFNLMPIPGLDGFDI
LRDLWPKTFYKISDVIYRYQMIILLIFVVTPISSFLVGIPTNFLHYSFMKIAMTIF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24229; Mature: 24229

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNYRILSKILIIPAILVGLTVHEFAHAYVADKLGDKTPKFQGRLTLNPFSHIDIIGFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHH
MILLIGFGWAKPVQINPSALKRGYKDEIKVSVAGVTANVITAFLFALLTAFLLKLNLVNF
HHHHHHCCCCCCCEECHHHHHCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GDITSLGGIIGLILNYIVRINCMLAIFNLMPIPGLDGFDILRDLWPKTFYKISDVIYRYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MIILLIFVVTPISSFLVGIPTNFLHYSFMKIAMTIF
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLNYRILSKILIIPAILVGLTVHEFAHAYVADKLGDKTPKFQGRLTLNPFSHIDIIGFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHH
MILLIGFGWAKPVQINPSALKRGYKDEIKVSVAGVTANVITAFLFALLTAFLLKLNLVNF
HHHHHHCCCCCCCEECHHHHHCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GDITSLGGIIGLILNYIVRINCMLAIFNLMPIPGLDGFDILRDLWPKTFYKISDVIYRYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MIILLIFVVTPISSFLVGIPTNFLHYSFMKIAMTIF
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]