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The map label for this gene is yobU [H]

Identifier: 153937024

GI number: 153937024

Start: 1654498

End: 1655184

Strand: Reverse

Name: yobU [H]

Synonym: CLC_1582

Alternate gene names: 153937024

Gene position: 1655184-1654498 (Counterclockwise)

Preceding gene: 153936393

Following gene: 153937578

Centisome position: 44.01

GC content: 28.09

Gene sequence:

>687_bases
ATGAGTGAAGAGCTTTATAGTACTGAATTAAATAATAAAAAAAATCATGAATATTGTATTTATTGTTATGAAAATGGAGC
TTTTAAGCATCCAAATTTAACTATAGAACAAATGATAGACGTATGTATACCTTTTATGAAAGAAAAAGGAATGAAGAAAG
ATGAAGCAATAGCATTAATGAAAAATTGTTTACCCAATTTAAAAAGATGGAGAAAAGAAGATATAATTACTAAAGTAGTA
GAAAAAGATAAAATGATAATAGTTGGAAAAGAAATAAGAACAACTAACAAAGACGATGCCTTTATGGCTGTAATTCCAAA
GCTTTGGGAAGAATTTGAGAATAAAAAACTTGGGGACAAAATATTAAATAAAGTAAATAAAGATGAGATTTTAGGTTTAT
ATACTGATTATGAAAATAAAGAATTTGGCTTATATTCTTTTATGGTGGGATTTCAAGTTACAGATAAAAATTCTATACCA
GAAGGTATGACATATAAAGTGATACCAACTGCAAAATATTGTGTAGTAACAGCTAAAGGCAAAATGCCCGATAAAATAGG
AGCAGCTTGGGGATATATATGGAATGCAGGACTTGAAAGAACCTATACAGGAGATTTTGAACTCTATGACAAAAGATATG
ATGGAACCGAAAATTCTGAAGTAGACATTTATGTAGCTATCAAATAA

Upstream 100 bases:

>100_bases
GACATAGTGTTGTCAAAGCCTTCCTATATAATACAAATATAAGCATAAGGAAGGGGAATAAAATATGTAACAAAGATATT
GTCAAAGTTGTGGAATGCCA

Downstream 100 bases:

>100_bases
AAACTAGCTTAATATTAATATACTAAGCTAGTTGCCATAAAATATTACTACTTTAAGTATTAATACTTTATGGCTTTAAT
TTTTTTATATTTCTCTACAG

Product: transcription activator effector binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITKVV
EKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIP
EGMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK

Sequences:

>Translated_228_residues
MSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITKVV
EKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIP
EGMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
>Mature_227_residues
SEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALMKNCLPNLKRWRKEDIITKVVE
KDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIPE
GMTYKVIPTAKYCVVTAKGKMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 26521; Mature: 26390

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALM
CCCCHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
KNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDK
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
ILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIPEGMTYKVIPTAKYCVVTAKG
HHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEECC
KMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
SEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKKDEAIALM
CCCHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
KNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDDAFMAVIPKLWEEFENKKLGDK
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
ILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDKNSIPEGMTYKVIPTAKYCVVTAKG
HHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEECC
KMPDKIGAAWGYIWNAGLERTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]