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The map label for this gene is 153936854

Identifier: 153936854

GI number: 153936854

Start: 1723910

End: 1724440

Strand: Direct

Name: 153936854

Synonym: CLC_1645

Alternate gene names: NA

Gene position: 1723910-1724440 (Clockwise)

Preceding gene: 153936653

Following gene: 153936075

Centisome position: 45.84

GC content: 26.18

Gene sequence:

>531_bases
TTGTACAAGCTACTAGAAAAATATAAGAAAGGTGATAGGGAAGCTTTGACAAAAATTATAGCATATTTTATTCCAATTAT
ATTAAAAGAGGCTCCAAAATGGAAAATTTCATGTTATGAATATGAAGATTTAGTACAGCATGGTTATCTTTCCGTTATAA
AGGCTGTTAATATGTTTAAAGGGGAGGAAAATAAATTTATTCCCTATTGTATAAAAACTATTAAAACAAATTATAAAGCT
CTATTAAAAGGAGAGATAAAGCATCATAGAGAAATACCAGATGAAAATATATCAGATAAAGGGAATGAATATTTCTTCAC
TATAGAGGATGAAATAATAGCCTATGAAAATATAAAGGAGCTTTATAAAGCATTAGACAAGCTTACTCCAGAAGAAAAAG
AAGTGATAGATAGCTTTTATATTAAAAATAATAGTCTTCAAGAAATAGCAAATTATACTAATAAAAGTTATAACTCAGTA
AGATATACTAAAGAAAAAGCTATAAAAAAACTGCAAAACATGCTTGAATAG

Upstream 100 bases:

>100_bases
AAAGATGAATTTAGTAGACAACCTTAAGGGAATATAGAAATAGTATGAATAGTAGATAGAGCTATAATTTTTTTAAATTA
ATAAGAGGATGGTGTTTGTA

Downstream 100 bases:

>100_bases
CATAGTTAATATTAAAGGGTATAGATAGAGTAGAGAGGATTGAGATGGAAAATTAATAACAGATGGTAAAAAGTATAGAA
AATATAAGAATTAGAGTAGA

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor Family; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor RpoE-Like Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MYKLLEKYKKGDREALTKIIAYFIPIILKEAPKWKISCYEYEDLVQHGYLSVIKAVNMFKGEENKFIPYCIKTIKTNYKA
LLKGEIKHHREIPDENISDKGNEYFFTIEDEIIAYENIKELYKALDKLTPEEKEVIDSFYIKNNSLQEIANYTNKSYNSV
RYTKEKAIKKLQNMLE

Sequences:

>Translated_176_residues
MYKLLEKYKKGDREALTKIIAYFIPIILKEAPKWKISCYEYEDLVQHGYLSVIKAVNMFKGEENKFIPYCIKTIKTNYKA
LLKGEIKHHREIPDENISDKGNEYFFTIEDEIIAYENIKELYKALDKLTPEEKEVIDSFYIKNNSLQEIANYTNKSYNSV
RYTKEKAIKKLQNMLE
>Mature_176_residues
MYKLLEKYKKGDREALTKIIAYFIPIILKEAPKWKISCYEYEDLVQHGYLSVIKAVNMFKGEENKFIPYCIKTIKTNYKA
LLKGEIKHHREIPDENISDKGNEYFFTIEDEIIAYENIKELYKALDKLTPEEKEVIDSFYIKNNSLQEIANYTNKSYNSV
RYTKEKAIKKLQNMLE

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20930; Mature: 20930

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLLEKYKKGDREALTKIIAYFIPIILKEAPKWKISCYEYEDLVQHGYLSVIKAVNMFK
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHCCHHHHHHHHHHHHHHHHHHHC
GEENKFIPYCIKTIKTNYKALLKGEIKHHREIPDENISDKGNEYFFTIEDEIIAYENIKE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHH
LYKALDKLTPEEKEVIDSFYIKNNSLQEIANYTNKSYNSVRYTKEKAIKKLQNMLE
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MYKLLEKYKKGDREALTKIIAYFIPIILKEAPKWKISCYEYEDLVQHGYLSVIKAVNMFK
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHCCHHHHHHHHHHHHHHHHHHHC
GEENKFIPYCIKTIKTNYKALLKGEIKHHREIPDENISDKGNEYFFTIEDEIIAYENIKE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHH
LYKALDKLTPEEKEVIDSFYIKNNSLQEIANYTNKSYNSVRYTKEKAIKKLQNMLE
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA