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The map label for this gene is xseB

Identifier: 153936799

GI number: 153936799

Start: 1941621

End: 1941836

Strand: Reverse

Name: xseB

Synonym: CLC_1828

Alternate gene names: 153936799

Gene position: 1941836-1941621 (Counterclockwise)

Preceding gene: 153936081

Following gene: 153937414

Centisome position: 51.64

GC content: 25.46

Gene sequence:

>216_bases
ATGGAAAAAAAGAAAGAATCCTTTGAAAATATGCTTGAGAAATTAGAAACTATAGTGGACAGTATGGATAATGGAGAAAT
AACCTTAGAAGATTCCATGAAAAGTTATGAAGAAGGAATAAAATTATGTAATAAATTATATAAAGTACTAAAAGATGCAG
AAGGTAAAATAAAGATTTTAGAAAATAACAAAGAGGAAGATTTTGAAAACTCATAG

Upstream 100 bases:

>100_bases
CAAATATCATAGTAAACTTTATATTTATGTTATGGTAGTTTATATTTAATAATTTAGAAATTATTAAATTGTAAATAATA
AACTAAATTAGGAGGAAAAT

Downstream 100 bases:

>100_bases
ACATATATTATATTTTTACTAAAGACTTTGAATTAATTAAAAGAAAGTTCAGATAGAGTAATAATCTAATCTGAATTAGG
ATTTACTTTACAGCTAAAAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MEKKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILENNKEEDFENS

Sequences:

>Translated_71_residues
MEKKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILENNKEEDFENS
>Mature_71_residues
MEKKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILENNKEEDFENS

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CLOB1 (A7FUT9)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384142.1
- ProteinModelPortal:   A7FUT9
- SMR:   A7FUT9
- STRING:   A7FUT9
- GeneID:   5394606
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_1821
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   NATDELN
- ProtClustDB:   PRK00977
- BioCyc:   CBOT441770:CLB_1821-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8309; Mature: 8309

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKIL
CCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ENNKEEDFENS
CCCCCCCCCCC
>Mature Secondary Structure
MEKKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKIL
CCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ENNKEEDFENS
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA