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The map label for this gene is xerD [H]

Identifier: 153934877

GI number: 153934877

Start: 1917686

End: 1918561

Strand: Reverse

Name: xerD [H]

Synonym: CLC_1808

Alternate gene names: 153934877

Gene position: 1918561-1917686 (Counterclockwise)

Preceding gene: 153936690

Following gene: 153934655

Centisome position: 51.02

GC content: 27.28

Gene sequence:

>876_bases
ATGAAAAATATTATAGAGAATTATATAAAAGATTTACAAAAGAAGAACTTAAGTAAAAATACTTTAGAGGCTTATAGAAG
AGATGTGGAGAAGTTTAGTGAGTTTGTTAGAAACAGAGAGGAAAGAATACTTTCTGTTGATACAGTTACTATAATGGCTT
TTGTTCAATATTTGCAAAGAGAAGGACGAGCTACATCTTCAATAGTAAGAAATATAGTATCTGTAAGAAATTTTTATAAA
TATTTAATAAAAAAAAACATGGTATCTGAGGACCCTACACTAGGATATGAAATACCTAAGATAGAAAGAACTATTCCTAA
AATACTTTCTGTAGAAGAAGTAGATAAACTTTTAAATTCCCCAAATTCTTCAAAAAAGGGATTAAGAGATAAAGCAATGC
TAGAACTTATGTATGCTACGGGAGTTAAGATTACAGAACTTTTAAATCTAAATATATATGATATAAATTTGAAGTTTAAT
TATATAAAATGTAGAGGCAGTAAAAAAAGAGAGAGAATTATACCTATAGGCTCCTATGCGATAAAGTGTTTAAAGAATTA
TTTAGAAGTAAGACCAGCTATAAATGTATATAATTTAGATTATTTGTTTTTAAATTTAAAGGGAACTCAAATGACTAGGC
AAGGTTTTTGGAAAATAATAAAATTTTATGCAAAAGAAGCATCTATAGATAAAGAAATAGATTCTTATACACTAAGACAT
TCCTTTGCAGTACATTTACTTCAAAATGGAGCAGATATAAAATCTGTACAGGAACTTTTAGGTCATAAGGATCTAGCTGC
AACTCAAATTTATTCTAGTATATCAAAGAAGAGTAAAATAGCAGAAGTATATAAAAATGCTCATCCAAGGGCATAA

Upstream 100 bases:

>100_bases
TATATATAATTATATACTAGTTTTTAATAATTTTTTAAGAGGTTTTTAAATTAATTTGTTGAATATAATAAAGTAAGCTT
AAAAAATAGGGGAATGGTAA

Downstream 100 bases:

>100_bases
TTTTAATAAAGCTTTCAAGATAAAGGAGGAGTTAATTTTGAATTTAAAGAAAATAAAAGAAAGTGCAGATTTTGTGAAAA
ATAACATATCTATAATGCCT

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYK
YLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFN
YIKCRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH
SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA

Sequences:

>Translated_291_residues
MKNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYK
YLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFN
YIKCRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH
SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA
>Mature_291_residues
MKNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYK
YLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFN
YIKCRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH
SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=38.3561643835616, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1790244, Length=289, Percent_Identity=30.7958477508651, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1790767, Length=187, Percent_Identity=28.3422459893048, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790768, Length=181, Percent_Identity=24.8618784530387, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33835; Mature: 33835

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQR
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCC
PNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYA
CCCCCCCCHHHHHHHHHHHCCCHHHHHHCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHH
IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH
HHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQR
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCC
PNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYA
CCCCCCCCHHHHHHHHHHHCCCHHHHHHCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHH
IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH
HHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]