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The map label for this gene is ygaF [C]

Identifier: 153934842

GI number: 153934842

Start: 2304293

End: 2305741

Strand: Reverse

Name: ygaF [C]

Synonym: CLC_2167

Alternate gene names: 153934842

Gene position: 2305741-2304293 (Counterclockwise)

Preceding gene: 153936418

Following gene: 153934692

Centisome position: 61.31

GC content: 31.4

Gene sequence:

>1449_bases
ATGTATGATGTTAGTATTATAGGTGCTGGAGTTGTTGGATCAGCCATTGCTAGAGAGTTATCAAAGTATAATTTAAAAGT
ATGTCTTATAGAAAAAGAGGAGGATGTTGGAACAGGAGCTTCCAAAGCAAATAGTGGTATTGTTCATGGTGGATATGTAG
CTAAATATGGAACTTTAAAGGGAGAATTATGTATAAGAGGAAACAGTATGTACAGTCAGCTAGAAAAAGAGCTTAACTTT
GGATATAGAAATCCAGGTGCATTAGTAATAGGCTTTGATGAAGATGATGAAAATAGAATAAAAAAATTATATGAAAATGG
TGTGAAAGTAGGGTGTGATGATCTGGAAATAATATATGGGGATAAAATAAAAGAATTGGAGCCTCATATAAATAAAGATG
TTAAAGTTGCATTATATGCTAAAAGTGTTGGTGTAGCTTCTCCTTATGAAATGACTATAGCCCTTGCCGAAAATGCAATA
GAAAATGGAGTAGATTTAAAATTAGAAACAAAAGTATTAACTATAGATAAAGAACATGAAACTTTTATAATAAATACTAA
TAAGGGAGAAATAAAAAGTAAGTATATTGTAAACGCTGCTGGATTATATAGTGATAAGATAGCTAATATGCTAGAGATGG
ATGATTTTAAAATATTGCCAAGAAGAGGGCAGTATGTACTTTCTACCAAAGATCAAGGCTATCTTGTAAATAAGGTTATA
TTTCAAGTGCCAACAGAAAAAGGAAAAGGAATATTAGTTACTACTACTTATCATGGAAACTTTATGATAGGTCCTGATGC
ACAGGAGGTAGTAGACAAAGAAGATATAGGAACAGATATAGAAAGTATAGAATATATAATAAAAACAGCTAGAAAATCTA
TACCAGATTTTGATGTAAGAAAATCTTTAACTACCTTTGCAGGAATAAGAGCAATTAGTAGTACAGGAGATTTTGTAATA
GAGGAAACTAAAGTTAAAGGCTTTATAAATGCAGCAGGTATAGATTCACCAGGCATTACATCTTCACCAGCTATAGCAGA
AAAAATAGTAGGAATTCTTAAGGAAGCTGGATTGCAATTAATAAAAAATGAAAAATTCAATCCCTACAGAAAGCCTATAA
TTATTAAAAAAGATAAATCCTTTGATGGAAAGATAGATGATGAAGATCCAACTAAAAACATAATATGTAGGTGTGAAAAG
GTAACGGAATCAGAAATAATAGATGCAATGAAAAGAGGAATTCCTGTAAAATCTACAGATGCAATAAAAAGACGTACAAG
GGCAGGTATGGGGTTTTGTCAAGGTAATTTCTGTAGACCAAGAGTAAAAGCTATAATAGCAAGAGAAATGGGTATACCAG
TAGAAAAAGTTACTGTAAGAGGCAAAGAGGGAGGAGAACCTCCTAAAAGAGTAAATATTAATGTAATAAGAAAAATTCAA
GGTGTTTGA

Upstream 100 bases:

>100_bases
TTATTTTAGGATGTAAAATAGTATTAAGAAAATAATAGAAGATATTAAAAAATATATATTATTAATAAGCTTGAAATAAT
AAGAATAAGAGGGTGAAACT

Downstream 100 bases:

>100_bases
TCTCTTTTAAATATTAATAAAATATAAGGAAATGCCTAAGATGTAAATAAGAGCTACTAATAAAAAAGTAGCTCTTATTT
ACATTTTAGGTATAATTTTA

Product: oxidoreductase, FAD/[2Fe-2S]-binding

Products: glycerone phosphate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MYDVSIIGAGVVGSAIARELSKYNLKVCLIEKEEDVGTGASKANSGIVHGGYVAKYGTLKGELCIRGNSMYSQLEKELNF
GYRNPGALVIGFDEDDENRIKKLYENGVKVGCDDLEIIYGDKIKELEPHINKDVKVALYAKSVGVASPYEMTIALAENAI
ENGVDLKLETKVLTIDKEHETFIINTNKGEIKSKYIVNAAGLYSDKIANMLEMDDFKILPRRGQYVLSTKDQGYLVNKVI
FQVPTEKGKGILVTTTYHGNFMIGPDAQEVVDKEDIGTDIESIEYIIKTARKSIPDFDVRKSLTTFAGIRAISSTGDFVI
EETKVKGFINAAGIDSPGITSSPAIAEKIVGILKEAGLQLIKNEKFNPYRKPIIIKKDKSFDGKIDDEDPTKNIICRCEK
VTESEIIDAMKRGIPVKSTDAIKRRTRAGMGFCQGNFCRPRVKAIIAREMGIPVEKVTVRGKEGGEPPKRVNINVIRKIQ
GV

Sequences:

>Translated_482_residues
MYDVSIIGAGVVGSAIARELSKYNLKVCLIEKEEDVGTGASKANSGIVHGGYVAKYGTLKGELCIRGNSMYSQLEKELNF
GYRNPGALVIGFDEDDENRIKKLYENGVKVGCDDLEIIYGDKIKELEPHINKDVKVALYAKSVGVASPYEMTIALAENAI
ENGVDLKLETKVLTIDKEHETFIINTNKGEIKSKYIVNAAGLYSDKIANMLEMDDFKILPRRGQYVLSTKDQGYLVNKVI
FQVPTEKGKGILVTTTYHGNFMIGPDAQEVVDKEDIGTDIESIEYIIKTARKSIPDFDVRKSLTTFAGIRAISSTGDFVI
EETKVKGFINAAGIDSPGITSSPAIAEKIVGILKEAGLQLIKNEKFNPYRKPIIIKKDKSFDGKIDDEDPTKNIICRCEK
VTESEIIDAMKRGIPVKSTDAIKRRTRAGMGFCQGNFCRPRVKAIIAREMGIPVEKVTVRGKEGGEPPKRVNINVIRKIQ
GV
>Mature_482_residues
MYDVSIIGAGVVGSAIARELSKYNLKVCLIEKEEDVGTGASKANSGIVHGGYVAKYGTLKGELCIRGNSMYSQLEKELNF
GYRNPGALVIGFDEDDENRIKKLYENGVKVGCDDLEIIYGDKIKELEPHINKDVKVALYAKSVGVASPYEMTIALAENAI
ENGVDLKLETKVLTIDKEHETFIINTNKGEIKSKYIVNAAGLYSDKIANMLEMDDFKILPRRGQYVLSTKDQGYLVNKVI
FQVPTEKGKGILVTTTYHGNFMIGPDAQEVVDKEDIGTDIESIEYIIKTARKSIPDFDVRKSLTTFAGIRAISSTGDFVI
EETKVKGFINAAGIDSPGITSSPAIAEKIVGILKEAGLQLIKNEKFNPYRKPIIIKKDKSFDGKIDDEDPTKNIICRCEK
VTESEIIDAMKRGIPVKSTDAIKRRTRAGMGFCQGNFCRPRVKAIIAREMGIPVEKVTVRGKEGGEPPKRVNINVIRKIQ
GV

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=278, Percent_Identity=27.6978417266187, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI24797151, Length=237, Percent_Identity=28.2700421940928, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI194306651, Length=360, Percent_Identity=21.6666666666667, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082148, Length=253, Percent_Identity=24.5059288537549, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788574, Length=486, Percent_Identity=22.6337448559671, Blast_Score=81, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565764, Length=401, Percent_Identity=28.428927680798, Blast_Score=135, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24585081, Length=407, Percent_Identity=28.2555282555283, Blast_Score=113, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5

Molecular weight: Translated: 53114; Mature: 53114

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDVSIIGAGVVGSAIARELSKYNLKVCLIEKEEDVGTGASKANSGIVHGGYVAKYGTLK
CEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCCC
GELCIRGNSMYSQLEKELNFGYRNPGALVIGFDEDDENRIKKLYENGVKVGCDDLEIIYG
CEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEECCCCEEEEEC
DKIKELEPHINKDVKVALYAKSVGVASPYEMTIALAENAIENGVDLKLETKVLTIDKEHE
CCHHHCCCCCCCCEEEEEEEECCCCCCCHHEEEEEHHHHHCCCCCEEEEEEEEEEECCCC
TFIINTNKGEIKSKYIVNAAGLYSDKIANMLEMDDFKILPRRGQYVLSTKDQGYLVNKVI
EEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEECCCCCCEEEECCCCCEEEEEEE
FQVPTEKGKGILVTTTYHGNFMIGPDAQEVVDKEDIGTDIESIEYIIKTARKSIPDFDVR
EEECCCCCCEEEEEEEECCCEEECCCHHHHHCHHHCCCCHHHHHHHHHHHHHCCCCHHHH
KSLTTFAGIRAISSTGDFVIEETKVKGFINAAGIDSPGITSSPAIAEKIVGILKEAGLQL
HHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IKNEKFNPYRKPIIIKKDKSFDGKIDDEDPTKNIICRCEKVTESEIIDAMKRGIPVKSTD
HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHCCHHHHHHHHHCCCCCCCHH
AIKRRTRAGMGFCQGNFCRPRVKAIIAREMGIPVEKVTVRGKEGGEPPKRVNINVIRKIQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCCCCCEECCEEEEEEC
GV
CC
>Mature Secondary Structure
MYDVSIIGAGVVGSAIARELSKYNLKVCLIEKEEDVGTGASKANSGIVHGGYVAKYGTLK
CEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCCC
GELCIRGNSMYSQLEKELNFGYRNPGALVIGFDEDDENRIKKLYENGVKVGCDDLEIIYG
CEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEECCCCEEEEEC
DKIKELEPHINKDVKVALYAKSVGVASPYEMTIALAENAIENGVDLKLETKVLTIDKEHE
CCHHHCCCCCCCCEEEEEEEECCCCCCCHHEEEEEHHHHHCCCCCEEEEEEEEEEECCCC
TFIINTNKGEIKSKYIVNAAGLYSDKIANMLEMDDFKILPRRGQYVLSTKDQGYLVNKVI
EEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEECCCCCCEEEECCCCCEEEEEEE
FQVPTEKGKGILVTTTYHGNFMIGPDAQEVVDKEDIGTDIESIEYIIKTARKSIPDFDVR
EEECCCCCCEEEEEEEECCCEEECCCHHHHHCHHHCCCCHHHHHHHHHHHHHCCCCHHHH
KSLTTFAGIRAISSTGDFVIEETKVKGFINAAGIDSPGITSSPAIAEKIVGILKEAGLQL
HHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IKNEKFNPYRKPIIIKKDKSFDGKIDDEDPTKNIICRCEKVTESEIIDAMKRGIPVKSTD
HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHCCHHHHHHHHHCCCCCCCHH
AIKRRTRAGMGFCQGNFCRPRVKAIIAREMGIPVEKVTVRGKEGGEPPKRVNINVIRKIQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCCCCCEECCEEEEEEC
GV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sn-glycerol 3-phosphate; acceptor

Specific reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]