Click here to switch to the map view.

The map label for this gene is yrrO [H]

Identifier: 153933965

GI number: 153933965

Start: 2604187

End: 2605413

Strand: Reverse

Name: yrrO [H]

Synonym: CLB_2496

Alternate gene names: 153933965

Gene position: 2605413-2604187 (Counterclockwise)

Preceding gene: 153933640

Following gene: 153931328

Centisome position: 67.44

GC content: 29.83

Gene sequence:

>1227_bases
ATGCTTAATATGAAAAAACCAGAACTTTTAGCTCCAGCAGGGAATTTAGAAAAATTAAAGACGGCTATAAACTTTGGAGC
AGATGCGGTTTATTTAGGTGGTAGCAAATTGAATCTAAGAGCATTTGCGGACAATTTCACAGATGATGAGCTTCAAGAGG
GTATAAAATATGCTCATGATAGAGGTAGAAAGGTTCATGTTACAATAAATGTTTTTCCACGTAATGAAGATTTTAATGGA
TTAGAAGAGTATTTGAAAAAATTATATGAATTTAATGTAGATGCCATAATAGTTTCAGATCCAGGAATTATTATGACTGC
AAGGGAAACAGTACCTAATTTGGAGATACATTTAAGCACTCAAGCAAATACAGTTAATTTTAAAACTATAAACTTTTGGT
ATAAACAAGGTGTTAAAAGAACTGTATTAGCAAGAGAATTAACTTTAGAAGAAATAAAAACCATAAGAGAAAAAATAGAA
AAAGATTGTCAATTAGAAGCCTTTGTTCATGGTTCTATGTGCATGTCTTATTCCGGTAGATGTCTTCTATCTAACTATAT
GACAGGAAGAGATTCTAATAGAGGAGCTTGTGCACAACCTTGTAGATATAAATATTATTTAATGGAAGAAAAAAGAGAAG
GGGAGTATTTCCCGATTTTAGAAGATGATAAAGGAACATACATAATGAATTCAAAGGATATGTGTATGATAGAGCACATA
CCAGAGTTAGTTCAAAGTGGCATAGATTCCTTTAAAATAGAAGGAAGAATGAAAAGTTCTTTCTATGTGGCTACAGTAGT
TAAAGCCTATAGAGAAGCTATAGACGCTTATTTTGAGGACTCAGAAAATTATACTTTTAAAGAAAGATGGATGGATTATT
TAAAAAAGGCTAGTCATAGAGCATATTTTACAGGTTTTTATTTTAATGATCCTAATAAGCAATTACATGAATCTTCTTCA
TATATTAGAACTTGTGATATTGTAGGTATTGTAAAAGAATTTAACGAAGAAACTATGGAAGCTATAGTAGAGCAAAGAAA
TAAATTACTAGATGGAGATGAATTAGAAGTTTTAAGGCCTGAAGGTCCTATATTTAAAATAAATATAACCAACATGAGAG
ATAAAAATGATAAAAAAATAGATTCCGCTCCTTCAGCTCAAATGGTATTTAAAGTTAACACGGATAAAAGCTTAAAAGAA
AATGATATACTTATAAAAAATAAATAA

Upstream 100 bases:

>100_bases
ATGAGAAAATATATGAATATGATAAGTGATAAGGATAATTTCATAACTTCAATTATACCTATGGGAGATGGAATTGCTAT
AACTAAGAGGAGGAATGAGG

Downstream 100 bases:

>100_bases
TATATAAAAACATATTTATATATTAGTGTGAAGAAAGAAAATTAGCCAAGAATATACCATTAATTTGTTATAATTTTAAA
TTTTATTATGCATAAAATGA

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDSENYTFKERWMDYLKKASHRAYFTGFYFNDPNKQLHESSS
YIRTCDIVGIVKEFNEETMEAIVEQRNKLLDGDELEVLRPEGPIFKINITNMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK

Sequences:

>Translated_408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDSENYTFKERWMDYLKKASHRAYFTGFYFNDPNKQLHESSS
YIRTCDIVGIVKEFNEETMEAIVEQRNKLLDGDELEVLRPEGPIFKINITNMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK
>Mature_408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDSENYTFKERWMDYLKKASHRAYFTGFYFNDPNKQLHESSS
YIRTCDIVGIVKEFNEETMEAIVEQRNKLLDGDELEVLRPEGPIFKINITNMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=443, Percent_Identity=36.568848758465, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1789548, Length=320, Percent_Identity=35.3125, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI87081910, Length=279, Percent_Identity=35.4838709677419, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47194; Mature: 47194

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHD
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
RGRKVHVTINVFPRNEDFNGLEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLST
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEEEEEEC
QANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIEKDCQLEAFVHGSMCMSYSGR
CCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCC
CLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEECCCCEEHHHHH
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDSENYTFKERWMDYLKKASHR
HHHHHCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
AYFTGFYFNDPNKQLHESSSYIRTCDIVGIVKEFNEETMEAIVEQRNKLLDGDELEVLRP
EEEEEEEECCCCHHHHHCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECC
EGPIFKINITNMRDKNDKKIDSAPSAQMVFKVNTDKSLKENDILIKNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECC
>Mature Secondary Structure
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHD
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
RGRKVHVTINVFPRNEDFNGLEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLST
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEEEEEEC
QANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIEKDCQLEAFVHGSMCMSYSGR
CCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCC
CLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEECCCCEEHHHHH
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDSENYTFKERWMDYLKKASHR
HHHHHCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
AYFTGFYFNDPNKQLHESSSYIRTCDIVGIVKEFNEETMEAIVEQRNKLLDGDELEVLRP
EEEEEEEECCCCHHHHHCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECC
EGPIFKINITNMRDKNDKKIDSAPSAQMVFKVNTDKSLKENDILIKNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]