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The map label for this gene is yshB [H]

Identifier: 152976939

GI number: 152976939

Start: 3308980

End: 3309519

Strand: Reverse

Name: yshB [H]

Synonym: Bcer98_3242

Alternate gene names: 152976939

Gene position: 3309519-3308980 (Counterclockwise)

Preceding gene: 152976940

Following gene: 152976938

Centisome position: 80.98

GC content: 32.59

Gene sequence:

>540_bases
ATGATTGATATCATTATCATTTTATTGCTTGTTATGGGATTTTTCCTCGGTTTAAGAAGAGGATTTATTCTACAACTTGT
AAAGTTAACAAGCTTTATTATCGCATACCTTGTTGCATACTGGTACTGTAAAGATTTAGCGCCAGCGTTGGCGAAAATGA
TTCCGTATCCGTTTGATAAAAATGTATCCGTTCCAGAATGGATTGATGCAAACAATATTGAGGCAGTATTTTATCAAGCA
ATTGCGTTTATTATACTGTTTATTGTTACAAAGATTGCACTTTCCTTACTTGGTAATTTGTTAAATATGTTTGCGGAAAT
ACCAGTGTTAAAGCAAATTAATGCATTTGCTGGAGCAATTCTTGGTTTTTTAGAAGTATACATTATTTTGTTTGTTTTAA
TTATTATTGGCACGATTCTTCCGATTGAACAAGTGCAAACACCATTACAAAAATCATCAATTAGCAAAATAATTGTAGAC
GATACACCGATTCTTTCTGAAAAGGTGAAGGAACTATGGCAGACAGGTAGCAGAGTATAA

Upstream 100 bases:

>100_bases
GCGGTATTGACGGCGGTAAACGTCATACACGATTACATAAAATTAAAAGAAGAACATGAAAAACTGAAAGAAAGTATGAG
ACAAAAAGGAATGGAATAAC

Downstream 100 bases:

>100_bases
CTTCTCTTTTTCGGAAAGAGAAGTTTTTTTCTATGAAGGAAAGGCGGGGAACGTATGAAAGTAAATAAAAAACAAGTGAT
TAAATTATTAGAAACAATCG

Product: colicin V production protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKMIPYPFDKNVSVPEWIDANNIEAVFYQA
IAFIILFIVTKIALSLLGNLLNMFAEIPVLKQINAFAGAILGFLEVYIILFVLIIIGTILPIEQVQTPLQKSSISKIIVD
DTPILSEKVKELWQTGSRV

Sequences:

>Translated_179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKMIPYPFDKNVSVPEWIDANNIEAVFYQA
IAFIILFIVTKIALSLLGNLLNMFAEIPVLKQINAFAGAILGFLEVYIILFVLIIIGTILPIEQVQTPLQKSSISKIIVD
DTPILSEKVKELWQTGSRV
>Mature_179_residues
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKMIPYPFDKNVSVPEWIDANNIEAVFYQA
IAFIILFIVTKIALSLLGNLLNMFAEIPVLKQINAFAGAILGFLEVYIILFVLIIIGTILPIEQVQTPLQKSSISKIIVD
DTPILSEKVKELWQTGSRV

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20133; Mature: 20133

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKMIPYPFDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVSVPEWIDANNIEAVFYQAIAFIILFIVTKIALSLLGNLLNMFAEIPVLKQINAFAGAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFLEVYIILFVLIIIGTILPIEQVQTPLQKSSISKIIVDDTPILSEKVKELWQTGSRV
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIDIIIILLLVMGFFLGLRRGFILQLVKLTSFIIAYLVAYWYCKDLAPALAKMIPYPFDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NVSVPEWIDANNIEAVFYQAIAFIILFIVTKIALSLLGNLLNMFAEIPVLKQINAFAGAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFLEVYIILFVLIIIGTILPIEQVQTPLQKSSISKIIVDDTPILSEKVKELWQTGSRV
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]