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The map label for this gene is sdhC [H]

Identifier: 152976916

GI number: 152976916

Start: 3284279

End: 3284905

Strand: Reverse

Name: sdhC [H]

Synonym: Bcer98_3217

Alternate gene names: 152976916

Gene position: 3284905-3284279 (Counterclockwise)

Preceding gene: 152976918

Following gene: 152976915

Centisome position: 80.37

GC content: 38.76

Gene sequence:

>627_bases
ATGAAAGGCCGCGAGTATACGTTTCGTAAGTGGCACTCATTAATGGGAGTCATCCCGGTTGGTGTCTTTTTGACGCAACA
CTTAGTAGTAAATAATTTTGCAACAAGAGGAGCAGAGGCTTTTAACAAAGCTGCTCATTTTATGGAGCTCCTTCCATTCC
GGTATGCGCTAGAGATTTTTGTCATCTTTTTACCGATACTGTACCATGCAATATATGGATTATATATTGCTTTTACAGCT
AAGAATAATGCAATATCATACAGCTATTTCCGCAACTGGATGTTCGTTTTCCAAAGAATCTCAGGTGTTATCACTCTTAT
CTTTATCTCCTGGCATGTTTGGGAAACTCGTATTCAAGCTGCGATGGGACAGCAAGTGAACTATGATATGATGGCGAATA
TTTTAGGAAATCCTGTTATGTTTGGTTTCTATTTAGTTGGGGTTGTATCAACAATTTTCCACTTTGCAAATGGGCTATGG
ACATTCTGCATTAGCTGGGGAATTACAGTATCACCACGTTCGCAACGTATCTCTACTTATGTAACTTTAGCAATTTTCTT
AGGTTTATCTTATGTAGGTGTGAGTGCATTATTAGCGTTTGTTGATCCGCAGCTAGCAAATCAGTAA

Upstream 100 bases:

>100_bases
ATAATTTTTTCAGTTTTTCTTATAGCAGTAGTGAAAAAACATTATTGTTATAAACTATTCTGAAAGCAGCAGTCAAACAT
TCAAGGGGGGTAATGGGGAC

Downstream 100 bases:

>100_bases
GGAGTGGGAGATCATGAAAGGGAAACTTATAGTAGTCGGCGGTGGCTTGGCTGGCTTAATGGCAACGATTAAAGCGGCAG
AAGCAGGAGTAAACGTGGAA

Product: succinate dehydrogenase/fumarate reductase cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLVVNNFATRGAEAFNKAAHFMELLPFRYALEIFVIFLPILYHAIYGLYIAFTA
KNNAISYSYFRNWMFVFQRISGVITLIFISWHVWETRIQAAMGQQVNYDMMANILGNPVMFGFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFVDPQLANQ

Sequences:

>Translated_208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLVVNNFATRGAEAFNKAAHFMELLPFRYALEIFVIFLPILYHAIYGLYIAFTA
KNNAISYSYFRNWMFVFQRISGVITLIFISWHVWETRIQAAMGQQVNYDMMANILGNPVMFGFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFVDPQLANQ
>Mature_208_residues
MKGREYTFRKWHSLMGVIPVGVFLTQHLVVNNFATRGAEAFNKAAHFMELLPFRYALEIFVIFLPILYHAIYGLYIAFTA
KNNAISYSYFRNWMFVFQRISGVITLIFISWHVWETRIQAAMGQQVNYDMMANILGNPVMFGFYLVGVVSTIFHFANGLW
TFCISWGITVSPRSQRISTYVTLAIFLGLSYVGVSALLAFVDPQLANQ

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23812; Mature: 23812

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGREYTFRKWHSLMGVIPVGVFLTQHLVVNNFATRGAEAFNKAAHFMELLPFRYALEIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFLPILYHAIYGLYIAFTAKNNAISYSYFRNWMFVFQRISGVITLIFISWHVWETRIQA
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMGQQVNYDMMANILGNPVMFGFYLVGVVSTIFHFANGLWTFCISWGITVSPRSQRISTY
HHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH
VTLAIFLGLSYVGVSALLAFVDPQLANQ
HHHHHHHHHHHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure
MKGREYTFRKWHSLMGVIPVGVFLTQHLVVNNFATRGAEAFNKAAHFMELLPFRYALEIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIFLPILYHAIYGLYIAFTAKNNAISYSYFRNWMFVFQRISGVITLIFISWHVWETRIQA
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMGQQVNYDMMANILGNPVMFGFYLVGVVSTIFHFANGLWTFCISWGITVSPRSQRISTY
HHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH
VTLAIFLGLSYVGVSALLAFVDPQLANQ
HHHHHHHHHHHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]