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The map label for this gene is ydcM [C]

Identifier: 152974029

GI number: 152974029

Start: 191447

End: 192598

Strand: Direct

Name: ydcM [C]

Synonym: Bcer98_0182

Alternate gene names: 152974029

Gene position: 191447-192598 (Clockwise)

Preceding gene: 152974028

Following gene: 152974030

Centisome position: 4.68

GC content: 35.94

Gene sequence:

>1152_bases
ATGTTGGTCAAAAAGGCATACAAATTCCGTATCTACCCGAATAAAGAACAAGAAATTCTAATTGCAAAAACAATCGGTTG
TTCTCGGTTTGTATTCAATCACTTTTTAGAGAAGTGGAATAACGTATACAAAGAGACAGGCAAAGGATTAACATATAATT
CTTGTTCAGATAAACTCACACAGTTGAAAAAGGAATTAGTATGGCTAAAAGAAGTTGATAGCATTGCCCTTCAATCATCA
CTCAAAAACCTTGCTGATTCGTATACTCGATTCTTCAAGAAACAAAACAAAGCACCACGTTTCAAGTCTAAAAAGAATAA
AGTGCAATCCTACACAACAAAGCATGTGAATGGAAATATTGCCATTGTAGACAACAAAATCAAGTTACCTAAACTTGGAT
TTGTTAGGTTTGCGAAAAGTCGTGAAGTAGAAGGACGTATTCTTCATGCTACAATGAGAAGAAATCCAAGTGGTAAGTAT
TTTGTATCCATTCTTGCTGAAACAAACGTTCAAGGACTTCCTAAAACTGGGTCGTCTGTTGGTGTGGATGTGGGTCTGAA
AGATTTTGCGATTCTTTCAACGGGAGAAGTATTTAGCAATCCTAAATGGTTTCGCAAACTGGAAGAAAAATTAGCGAAAG
CACAGCGTGTTCTTTCCAGACGACAGGAATTGGCATTAAAACGAAAATGTAAACTGGATGAAGCAAAAAACTATCAAAAG
CAAAAACGTAAAGTAGCTCGCATCCATGAGAACATCACGAATGCAAGAACAGACTATTTGCAAAAAATCTCTACTTATAT
TGTCAAAAACCACGACATCATTGGTATGGAAAATTTGCAAGTGTCAAATATGTTGAAGAATCATAAGTTAGCTAAAGCCA
TTAGTGAAGTGAGTTGGTCGCAATTCAGAACGATGTTAGCGTACAAGGCAAGATGGTACGGTAAACAAGTAGTGACTGTA
TCTAAAACATTTGCAAGTTCTCAATTGTGTTCAGTTTGTGGCTACCAAAATAAAGACGTTAAGAATCTTAAACTTATAGA
ATGGACTTGCCCTAAATGTAATAGTCATCACGATAGAGATATTAACGCAGGACAAAATCTTAAAAATGAAGCAATAAGAC
TTCTAACCGTAGGGACTACGGGGATATCCTAA

Upstream 100 bases:

>100_bases
AAATACGTTTCATGTTTTTCACTACCCTTTCAGTATATACTCGAAACATTCTATATATTAAATATATAATTAGTGTATAC
CGAGAAGGAGGTAGAAATCA

Downstream 100 bases:

>100_bases
TCAATAACTAACCGATAGGTTGGTGTTCTTAGGAATCTCCCACTTCAAACAGACCGTAAGGTCGTTAAGTGGTGAGTAGT
TCAACATTGTTTCATTATAA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLVKKAYKFRIYPNKEQEILIAKTIGCSRFVFNHFLEKWNNVYKETGKGLTYNSCSDKLTQLKKELVWLKEVDSIALQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHVNGNIAIVDNKIKLPKLGFVRFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMENLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLIEWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIS

Sequences:

>Translated_383_residues
MLVKKAYKFRIYPNKEQEILIAKTIGCSRFVFNHFLEKWNNVYKETGKGLTYNSCSDKLTQLKKELVWLKEVDSIALQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHVNGNIAIVDNKIKLPKLGFVRFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMENLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLIEWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIS
>Mature_383_residues
MLVKKAYKFRIYPNKEQEILIAKTIGCSRFVFNHFLEKWNNVYKETGKGLTYNSCSDKLTQLKKELVWLKEVDSIALQSS
LKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHVNGNIAIVDNKIKLPKLGFVRFAKSREVEGRILHATMRRNPSGKY
FVSILAETNVQGLPKTGSSVGVDVGLKDFAILSTGEVFSNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMENLQVSNMLKNHKLAKAISEVSWSQFRTMLAYKARWYGKQVVTV
SKTFASSQLCSVCGYQNKDVKNLKLIEWTCPKCNSHHDRDINAGQNLKNEAIRLLTVGTTGIS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=372, Percent_Identity=34.4086021505376, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44008; Mature: 44008

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVKKAYKFRIYPNKEQEILIAKTIGCSRFVFNHFLEKWNNVYKETGKGLTYNSCSDKLT
CCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHH
QLKKELVWLKEVDSIALQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHVNGNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
AIVDNKIKLPKLGFVRFAKSREVEGRILHATMRRNPSGKYFVSILAETNVQGLPKTGSSV
EEEECCCCCCCCHHHHHHCCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
GVDVGLKDFAILSTGEVFSNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
EEECCCHHEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMENLQVSNMLKNHKLAKAISEVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
QFRTMLAYKARWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLKLIEWTCPKCNSHHDRD
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
INAGQNLKNEAIRLLTVGTTGIS
CCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MLVKKAYKFRIYPNKEQEILIAKTIGCSRFVFNHFLEKWNNVYKETGKGLTYNSCSDKLT
CCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHH
QLKKELVWLKEVDSIALQSSLKNLADSYTRFFKKQNKAPRFKSKKNKVQSYTTKHVNGNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
AIVDNKIKLPKLGFVRFAKSREVEGRILHATMRRNPSGKYFVSILAETNVQGLPKTGSSV
EEEECCCCCCCCHHHHHHCCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
GVDVGLKDFAILSTGEVFSNPKWFRKLEEKLAKAQRVLSRRQELALKRKCKLDEAKNYQK
EEECCCHHEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKRKVARIHENITNARTDYLQKISTYIVKNHDIIGMENLQVSNMLKNHKLAKAISEVSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
QFRTMLAYKARWYGKQVVTVSKTFASSQLCSVCGYQNKDVKNLKLIEWTCPKCNSHHDRD
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCC
INAGQNLKNEAIRLLTVGTTGIS
CCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]