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The map label for this gene is rplW [H]

Identifier: 152973958

GI number: 152973958

Start: 128893

End: 129183

Strand: Direct

Name: rplW [H]

Synonym: Bcer98_0106

Alternate gene names: 152973958

Gene position: 128893-129183 (Clockwise)

Preceding gene: 152973957

Following gene: 152973959

Centisome position: 3.15

GC content: 40.55

Gene sequence:

>291_bases
ATGAGAGATCCTCGTGATATCATTAAGCGCCCAGTTATCACTGAACGTTCTATGGAAATGATGGCTGAAAAAAAATACAC
GTTCGATGTGGACGTTAAAGCTAATAAAACAGAAGTTAAAGACGCTGTAGAAGCGATCTTTGGTGTTGAAGTAGAGAAAG
TGAACATCATGAACTACAAGCCGAAAGCTAAACGCGTTGGTCGTCACGCTGGTTTTACTAACCGTCGTCGTAAAGCAATC
GTTAAGCTAACAGCTGACAGCAAAGAAATCGAAATCTTCCAAGGTGTTTAA

Upstream 100 bases:

>100_bases
TAATCACTGCTGATGGCGTAAACGTTTTAGACGTGCTTCATCATGATAAGCTAATCATGACAAAAGCGGCAGTGGAAAAA
GTAGAGGAGGTGCTTGCATA

Downstream 100 bases:

>100_bases
TTCTTACTAAAGAAGGAGGGAAATTGAGATGGCAATTAAAAAGTATAATCCAACTACTAACGGTCGTCGTAACATGACAA
CTAATGATTTCGCTGAAATC

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKANKTEVKDAVEAIFGVEVEKVNIMNYKPKAKRVGRHAGFTNRRRKAI
VKLTADSKEIEIFQGV

Sequences:

>Translated_96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKANKTEVKDAVEAIFGVEVEKVNIMNYKPKAKRVGRHAGFTNRRRKAI
VKLTADSKEIEIFQGV
>Mature_96_residues
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKANKTEVKDAVEAIFGVEVEKVNIMNYKPKAKRVGRHAGFTNRRRKAI
VKLTADSKEIEIFQGV

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 11112; Mature: 11112

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKANKTEVKDAVEAIFGVEVEKVNIMNYK
CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCC
PKAKRVGRHAGFTNRRRKAIVKLTADSKEIEIFQGV
CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKANKTEVKDAVEAIFGVEVEKVNIMNYK
CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCC
PKAKRVGRHAGFTNRRRKAIVKLTADSKEIEIFQGV
CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA