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The map label for this gene is ybcM [H]

Identifier: 152969560

GI number: 152969560

Start: 1153083

End: 1153871

Strand: Direct

Name: ybcM [H]

Synonym: KPN_01003

Alternate gene names: 152969560

Gene position: 1153083-1153871 (Clockwise)

Preceding gene: 152969559

Following gene: 152969561

Centisome position: 21.69

GC content: 62.23

Gene sequence:

>789_bases
ATGGAGAGTATCCACTTTCAGCATAACGCCTTAACCGCGGCGGAGATCACCACCCGACGGCTATGCAGACTGCATCGCGT
GCGGCTGTTCTCCCCGGCGCTCTGTCGGGTGAAACGCGGCAGCAAAGTGATTGTGCAAGGGGAGAGCCGGGTGCTGGCGA
CTCCGCAACAGCTGATTGTTTTGCCAGCTGATGTGGAACTGGAGGTGATTAACCAGCCGGAGAACGGCCTCTTTTGCTCC
GATCTGCTGTCGCTGACGCCCGAGCTGCTGACGAGGTTTAAGACTCGTTATCTCAGCGAACCACCGCCAGGGCGCCTGAC
CTCGCTCTGCGCACCGGTGACGACAGAGCTGGCGTTTATGTGGCAAAGCGTTCTGCAGGCGGTGCGGGAGGGATTGTCCG
TCGCGCTGCAGCAGCACCAGACCATGGGGCTGCTGCTGGCCCTGTATGAGGCTGGCTATGCGGGCCCGCTGCTCGTCGAG
CGGCAGCAGGATCTGTCGGCGCAGGTGCGGCAGCTGATTATGCTGTCGCCGGCGCAGGCATGGAGCGTGTCGCGGGTGGC
GAAAATGCTCTTTCTCGGCGAGTCCACGCTGCGCCGTCGGCTGCAGCAGGAATCGCAGAGTTTTCGCCAGATCGTCGAGG
AGGTGCGGATGGCCCACGCCCTGGGCCAGCTGCAGACCACCTCGCGGCCAATAGGCGAAATTGCGCAGAACAGCGGATAT
CAGTCGGGATCGCGCTTTACCGCGCGCTTCCGTCAGCATTACGGTTTACTGCCGAAGCATGTACGCTGA

Upstream 100 bases:

>100_bases
GGGCCAGCGGGGCGCTGGTCGGCTATCTGTTACATAGCCATGCTCTCGCCAGCGCACAGTTGACGGCGATGGCCGGGCGT
TAAAATAAAAGGTCGGTCTG

Downstream 100 bases:

>100_bases
ACGAATTTGCTATCCTCAGCGTATAGCGTGAGCGAAAAGGAGATGATTATGGCCAGTATCTGCACAATGGCATGGGTTTA
CGGTTCGGTTCAGGGCGTGG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MESIHFQHNALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCS
DLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVE
RQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY
QSGSRFTARFRQHYGLLPKHVR

Sequences:

>Translated_262_residues
MESIHFQHNALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCS
DLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVE
RQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY
QSGSRFTARFRQHYGLLPKHVR
>Mature_262_residues
MESIHFQHNALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCS
DLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVE
RQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY
QSGSRFTARFRQHYGLLPKHVR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=252, Percent_Identity=34.5238095238095, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1786776, Length=225, Percent_Identity=23.5555555555556, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787776, Length=105, Percent_Identity=34.2857142857143, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790557, Length=96, Percent_Identity=34.375, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789932, Length=103, Percent_Identity=33.9805825242718, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29523; Mature: 29523

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESIHFQHNALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCEEECCHHEEE
LPADVELEVINQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFM
ECCCCEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
WSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
QSGSRFTARFRQHYGLLPKHVR
CCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MESIHFQHNALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCEEECCHHEEE
LPADVELEVINQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFM
ECCCCEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
WQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
WSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGY
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
QSGSRFTARFRQHYGLLPKHVR
CCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]