Click here to switch to the map view.

The map label for this gene is ymbA [H]

Identifier: 152969538

GI number: 152969538

Start: 1116158

End: 1116721

Strand: Direct

Name: ymbA [H]

Synonym: KPN_00981

Alternate gene names: 152969538

Gene position: 1116158-1116721 (Clockwise)

Preceding gene: 152969537

Following gene: 152969539

Centisome position: 21.0

GC content: 59.04

Gene sequence:

>564_bases
ATGAAAAAATGGTTACTGGCGGCAGCCGTATGCGTACTGACGGCGTGCAGTATCGGCGGGGAAAGCAAGACATACTATCA
GCTACCGGTTGTGCAGGGCGGCGCGCAGAGCGCCGCCAGTCAGGGGGCACGTCTGCTGTGGGTAGAGCAGGTCAGCATCC
CGGATTATCTGGCGGGTAACGGGGTGGTCTATCAGACCACCGACGTGCAGTATGTGATCGCCAATAATAATCTGTGGGCC
AGTCCGCTGGATCAGCAGCTGCGTACCACGCTGGTGGCAAATCTCAGCCAGCAGTTGCCCGGCTGGGTAGTGTCGTCCCA
GCCGCTGGGGAGCGAGCAGGATACCCTCAACGTTGCGGTCAATGGCTTTCATGGTCGCTATGACGGGCGGGTTATCGTTA
GCGGTGAGTGGCTGCTGAAGCATCAGGGACAGCTGATTAAGCGCCCGTTTAACATCGTCCTCAGGCAGGAACAGGATGGT
TATGACGCGATGGTCAAGACCCTGGCGCAGGCGTGGAGCCAGGAGGCGGCTGCCATTGCCAGCGAGCTTAATCGTCTGCC
ATAA

Upstream 100 bases:

>100_bases
GTGAGCTGCAGCCGGTTCTGAAAACGCTAAATGATAAGAGCAATGCGCTGGTATTTGAGGCGAAGGATAAAAAAGATCCA
CAGCCGAAGGGAGCGAAATA

Downstream 100 bases:

>100_bases
GTAAAATTCATCATAATGACCTGCCGCGCGGTTCACCTGGGCCGCGCGGCATTTTTTTTGCCAGGTCAGTTCGTTACCGG
CGGCTGCGCCGAGCGAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKWLLAAAVCVLTACSIGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP

Sequences:

>Translated_187_residues
MKKWLLAAAVCVLTACSIGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP
>Mature_187_residues
MKKWLLAAAVCVLTACSIGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=187, Percent_Identity=75.9358288770053, Blast_Score=289, Evalue=8e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 20411; Mature: 20411

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLLAAAVCVLTACSIGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGN
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEECCC
GVVYQTTDVQYVIANNNLWASPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAV
CEEEEECCEEEEEECCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE
NGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDGYDAMVKTLAQAWSQEAAAIA
ECCCCCCCCEEEEECCEEECCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SELNRLP
HHHHCCC
>Mature Secondary Structure
MKKWLLAAAVCVLTACSIGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGN
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEECCC
GVVYQTTDVQYVIANNNLWASPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAV
CEEEEECCEEEEEECCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE
NGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDGYDAMVKTLAQAWSQEAAAIA
ECCCCCCCCEEEEECCEEECCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SELNRLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]