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The map label for this gene is rpoE

Identifier: 151222244

GI number: 151222244

Start: 2249664

End: 2250194

Strand: Reverse

Name: rpoE

Synonym: NWMN_2032

Alternate gene names: 151222244

Gene position: 2250194-2249664 (Counterclockwise)

Preceding gene: 151222245

Following gene: 151222243

Centisome position: 78.16

GC content: 32.58

Gene sequence:

>531_bases
ATGAAAATTCAAGATTATACAAAACAAATGGTTGATGAAAAATCATTTATTGATATGGCTTATACATTATTGAATGATAA
AGGCGAAACAATGAACTTATATGATATCATCGATGAATTTAGAGCGTTAGGTGATTATGAGTACGAAGAAATTGAAAATC
GTGTTGTACAATTTTACACGGATTTAAACACAGATGGTCGTTTTTTAAATGTTGGAGAAAATTTATGGGGATTACGTGAT
TGGTATTCGGTAGATGATATTGAAGAGAAAATCGCACCAACTATTCAAAAATTCGATATTCTGGATGCAGATGATGAAGA
AGATCAAAACTTAAAATTATTGGGCGAAGATGAAATGGATGACGACGATGATATTCCAGCTCAAACAGATGATCAAGAAG
AACTAAATGATCCAGAAGATGAGCAGGTTGAAGAAGAAATCAATCATTCGGATATAGTCATTGAAGAAGATGAAGATGAA
CTAGACGAAGACGAAGAAGTGTTTGAAGACGAAGAAGACTTCAACGATTAA

Upstream 100 bases:

>100_bases
AAATATGATATTGTCATTTATAATTTAGTTTTGTTACTATATATAAATGAATTCAGACGTATAAATTTAGATTATATCCT
TCGAAAGGAAGTATTGGGCA

Downstream 100 bases:

>100_bases
TTTTTTGTTTGACTTTTAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATA
CGCTCCCCTTACAGAATTTG

Product: DNA-directed RNA polymerase subunit delta

Products: diphosphate; RNAn+1

Alternate protein names: RNAP delta factor

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYTDLNTDGRFLNVGENLWGLRD
WYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMDDDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDE
LDEDEEVFEDEEDFND

Sequences:

>Translated_176_residues
MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYTDLNTDGRFLNVGENLWGLRD
WYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMDDDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDE
LDEDEEVFEDEEDFND
>Mature_176_residues
MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYTDLNTDGRFLNVGENLWGLRD
WYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMDDDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDE
LDEDEEVFEDEEDFND

Specific function: Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis

COG id: COG3343

COG function: function code K; DNA-directed RNA polymerase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rpoE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOE_STAA1 (A7X4Y0)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442702.1
- STRING:   A7X4Y0
- EnsemblBacteria:   EBSTAT00000005380
- GeneID:   5559469
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_2112
- eggNOG:   COG3343
- GeneTree:   EBGT00050000024145
- HOGENOM:   HBG693912
- OMA:   TDMNTDG
- ProtClustDB:   PRK02363
- BioCyc:   SAUR418127:SAHV_2112-MONOMER
- HAMAP:   MF_00357
- InterPro:   IPR007759
- PANTHER:   PTHR23405:SF1

Pfam domain/function: PF05066 RNA_pol_delta

EC number: 2.7.7.6

Molecular weight: Translated: 20881; Mature: 20881

Theoretical pI: Translated: 3.36; Mature: 3.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
CCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCC
DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
CCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCEEEECCCHHCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
CCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCC
DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
CCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCEEEECCCHHCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA