Definition | Methanococcus aeolicus Nankai-3, complete genome. |
---|---|
Accession | NC_009635 |
Length | 1,569,500 |
Click here to switch to the map view.
The map label for this gene is rpl34e
Identifier: 150401551
GI number: 150401551
Start: 1172336
End: 1172605
Strand: Reverse
Name: rpl34e
Synonym: Maeo_1128
Alternate gene names: 150401551
Gene position: 1172605-1172336 (Counterclockwise)
Preceding gene: 150401552
Following gene: 150401550
Centisome position: 74.71
GC content: 37.04
Gene sequence:
>270_bases ATGCCTGCTCCAAGATTTAAGTCAGGTTCATTCAAAAAAATTTCAAAAAGAGGTCCTGGAAACAAAACTCTCACACACCA CAGAAGAAGTAAAGTTTCAAAAGCTAAATGTGGTGCATGTGGAGCTCTCCTTAACGGAGTTCCAAGAGGACGAAAAATAG AGATAGCAAAACTTTCAAAGACAGAGAAAAGACCAGAGAGACCATATGGTGGATTTTTATGTCCAAAATGTCTCAAAAGG TTAATGATTGAGAAAGCAAGAAACTTATAG
Upstream 100 bases:
>100_bases AAGGAGCTCCACCAATACCAGCAAAATATTTATATACTATAATTGCATACTAAATATACCATTTTAATACAAATTAAATG AAACACAAAGAGGTTATAAT
Downstream 100 bases:
>100_bases GGTGCGATAATGATAATAACTATTGGAGGACTTCCGGGAACTGGAACCACAACCATAGCAAAGCTAATATCTGAAAAATA TAATTTAAATCATGTTTGTG
Product: 50S ribosomal protein L34e
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 89; Mature: 88
Protein sequence:
>89_residues MPAPRFKSGSFKKISKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSKTEKRPERPYGGFLCPKCLKR LMIEKARNL
Sequences:
>Translated_89_residues MPAPRFKSGSFKKISKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSKTEKRPERPYGGFLCPKCLKR LMIEKARNL >Mature_88_residues PAPRFKSGSFKKISKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSKTEKRPERPYGGFLCPKCLKRL MIEKARNL
Specific function: Unknown
COG id: COG2174
COG function: function code J; Ribosomal protein L34E
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L34e family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RL34_META3 (A6UW33)
Other databases:
- EMBL: CP000743 - RefSeq: YP_001325317.1 - STRING: A6UW33 - GeneID: 5327334 - GenomeReviews: CP000743_GR - KEGG: mae:Maeo_1128 - eggNOG: arNOG12906 - HOGENOM: HBG553083 - OMA: RRKYVRT - ProtClustDB: PRK04059 - BioCyc: MAEO419665:MAEO_1128-MONOMER - GO: GO:0005840 - GO: GO:0006412 - HAMAP: MF_00349 - InterPro: IPR008195 - PANTHER: PTHR10759 - PRINTS: PR01250
Pfam domain/function: PF01199 Ribosomal_L34e
EC number: NA
Molecular weight: Translated: 9917; Mature: 9786
Theoretical pI: Translated: 11.75; Mature: 11.75
Prosite motif: PS01145 RIBOSOMAL_L34E
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPRFKSGSFKKISKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSK CCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCC TEKRPERPYGGFLCPKCLKRLMIEKARNL CCCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure PAPRFKSGSFKKISKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSK CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCC TEKRPERPYGGFLCPKCLKRLMIEKARNL CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA