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The map label for this gene is rpoD [H]

Identifier: 150401521

GI number: 150401521

Start: 1143671

End: 1144264

Strand: Reverse

Name: rpoD [H]

Synonym: Maeo_1098

Alternate gene names: 150401521

Gene position: 1144264-1143671 (Counterclockwise)

Preceding gene: 150401522

Following gene: 150401520

Centisome position: 72.91

GC content: 31.14

Gene sequence:

>594_bases
TTGATTAAAAACATTCAAAAAGAAAAAACTAAAATTGGAGAAACCCTTAAATTTACTATCGGGGGAGCTCCCATTTCCTT
TTCTAGTGCATTAAGAAGAATTATGGTTTCAAGTGTTCCTACTTATGCCATTGAAAATGTATATTTTTATGAGAATTCTT
CCTCAATGTATGATGAAATATTAGCACATAGATTGGCATTAATACCCATAACTGGGAAGCCTGTTATTAGTGATGAAGTT
GTGCGATTTTCAATTATGAAGGAAGGACCTTGCACAGTTTATTCTGCGGATTTAGAATCGGAATCCGATAGTATGGTTGC
TTTTGATAATATTCCAATAGTAAAATTAAAAGAAGGACAAAAATTAGAATTGGAATGTGAGGCACTTGTAGGAGTGGGAA
AAAATCATGCAAAATGGCAACCATGCAATGCAAGTTATAAATTGATAAAGGATAATGAAGTAGAATTTTCAGTGGAATCT
CATGGGCAAATGGATTCTGAGGATATTTTAATATCTGCAATAGAGGTATTAAAAAATAAAGCTGAAAAATTCTTATATGA
ATTAGAAAGCTATGAAATAAATAAAGCTGAATAA

Upstream 100 bases:

>100_bases
AAGGGAATAGATAATTATATAGAAATATTGCGTATGTATAATATAATTATGATATAATGATATTATACAGATATATATTT
CTATTACATTGGTGGTATGT

Downstream 100 bases:

>100_bases
GCGATATCAATATATATTTATAAATATTAAATTTTATAATATATGCATAAAAAACGGTGAAAATATGAGGAAATTAAAGT
CAACCAATCCGCAACTTGTT

Product: RNA polymerase insert

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIKNIQKEKTKIGETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGKPVISDEV
VRFSIMKEGPCTVYSADLESESDSMVAFDNIPIVKLKEGQKLELECEALVGVGKNHAKWQPCNASYKLIKDNEVEFSVES
HGQMDSEDILISAIEVLKNKAEKFLYELESYEINKAE

Sequences:

>Translated_197_residues
MIKNIQKEKTKIGETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGKPVISDEV
VRFSIMKEGPCTVYSADLESESDSMVAFDNIPIVKLKEGQKLELECEALVGVGKNHAKWQPCNASYKLIKDNEVEFSVES
HGQMDSEDILISAIEVLKNKAEKFLYELESYEINKAE
>Mature_197_residues
MIKNIQKEKTKIGETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGKPVISDEV
VRFSIMKEGPCTVYSADLESESDSMVAFDNIPIVKLKEGQKLELECEALVGVGKNHAKWQPCNASYKLIKDNEVEFSVES
HGQMDSEDILISAIEVLKNKAEKFLYELESYEINKAE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoD/eukaryotic RPB3 RNA polymerase subunit family [H]

Homologues:

Organism=Caenorhabditis elegans, GI25155095, Length=193, Percent_Identity=29.5336787564767, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322168, Length=160, Percent_Identity=30, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001514
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR022842 [H]

Pfam domain/function: PF01000 RNA_pol_A_bac; PF01193 RNA_pol_L [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 22111; Mature: 22111

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNIQKEKTKIGETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEI
CCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHEEEEEEEECCCHHHHHH
LAHRLALIPITGKPVISDEVVRFSIMKEGPCTVYSADLESESDSMVAFDNIPIVKLKEGQ
HHHHEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCEEEECCCC
KLELECEALVGVGKNHAKWQPCNASYKLIKDNEVEFSVESHGQMDSEDILISAIEVLKNK
EEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHH
AEKFLYELESYEINKAE
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIKNIQKEKTKIGETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEI
CCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHEEEEEEEECCCHHHHHH
LAHRLALIPITGKPVISDEVVRFSIMKEGPCTVYSADLESESDSMVAFDNIPIVKLKEGQ
HHHHEEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEECCCCEEEECCCC
KLELECEALVGVGKNHAKWQPCNASYKLIKDNEVEFSVESHGQMDSEDILISAIEVLKNK
EEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHH
AEKFLYELESYEINKAE
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]