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The map label for this gene is rbfA [H]

Identifier: 150398628

GI number: 150398628

Start: 3649659

End: 3650063

Strand: Direct

Name: rbfA [H]

Synonym: Smed_3442

Alternate gene names: 150398628

Gene position: 3649659-3650063 (Clockwise)

Preceding gene: 150398627

Following gene: 150398629

Centisome position: 96.5

GC content: 61.48

Gene sequence:

>405_bases
ATGGCCAAATCCACATCCTCAGCTCCTTCACAGCGCATGTTGCGCGTCGGCGAACAGGTGCGCGCCGCGATCACACAGGT
GCTGCAGCGCGGCGACGTGCGCGACCCGCTTATTGAGAGCACGGTGATCTCCATTTCCGAAGTGCGCATGTCGCCCGACC
TGAAGCTCGCCACCGCCTATGTGACCCCGCTTGGGGTCGCCGATCATGCGGCGGTCATCGAAGCGCTGAACAAGCACGCC
AAGTTCATCCGCGGGCGGCTCGGCCCGCACCTGCGGCAGATGAAATACATGCCGGACGTCCGTTTCCGGGACGATACCAG
CTTCGAAAACTATCAGAAGATCGACTCGCTGCTACGCTCTCCGGAGGTCAGTCGCGACCTCGATCGCGACAGTGACGAAG
AATAA

Upstream 100 bases:

>100_bases
TGCGCGGTTTTCCGCCCGCATTCCGCTCAAACTCTTTAGAATCGATCACATTTCGATGGGCGCTTGATACCGCCTGGGCT
GCGTGATCCAGGGTGAAACC

Downstream 100 bases:

>100_bases
GCAACGCAACCATGTCCAGACCCCGCAAACCAAAGGGCCGCCCGATTTCAGGATGGCTAATCCTCGACAAGCCTCTCGAT
TTCGGTTCGACCGAGGCAGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAKSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVTPLGVADHAAVIEALNKHA
KFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSPEVSRDLDRDSDEE

Sequences:

>Translated_134_residues
MAKSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVTPLGVADHAAVIEALNKHA
KFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSPEVSRDLDRDSDEE
>Mature_133_residues
AKSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVTPLGVADHAAVIEALNKHAK
FIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSPEVSRDLDRDSDEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15109; Mature: 14978

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VTPLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRS
HCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
PEVSRDLDRDSDEE
CCHHHHCCCCCCCC
>Mature Secondary Structure 
AKSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
VTPLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRS
HCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
PEVSRDLDRDSDEE
CCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]