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The map label for this gene is rbsC [H]

Identifier: 150398421

GI number: 150398421

Start: 3405270

End: 3406244

Strand: Direct

Name: rbsC [H]

Synonym: Smed_3229

Alternate gene names: 150398421

Gene position: 3405270-3406244 (Clockwise)

Preceding gene: 150398420

Following gene: 150398422

Centisome position: 90.04

GC content: 62.15

Gene sequence:

>975_bases
ATGAGTGTGGAAACCGTCGAAAGCGCGGGACCGAGGCCGAAGAAAGGCGTCAGCATCCTGTTCGGCCTGACGCTTCTGGG
ATTGCTGCTTGCTCTCTGGCTGGCTTTGGGTGTATCGACCCAGGCTTTCTGGACGCCGAACAACATCAGCAACCTTCTGC
GCCAGGGCGCGATGACCGCTATTCTCGCCGTCGGCCAGACCTTCGTCATCATTACCGCGGGAATCGACCTGTCGGTCGGC
GCTGTGGTCGGTTTTACCAGCGTTATCGTCGCCTGGCTGCTCGCGGCAGGCGTTCCGCTCTGGCTCGCGATCATCGCGAC
GCTGGCGATCGGGGTGCTGATCGGCGCCTTTCATGCCTTCGGCATCGTTCGCATGGGGCTGCCGCCCTTCATCATCACGC
TGGCGACGCTGACATCGCTTCGCGGCATAGGTCTCCTGATCACCAATGGCTCGACGATCTCGATCACCCACGATGCCTTC
ACCACGTTCTCGCGCGCCGATTTCCTCGGAGTTCCCAGTCTTTTCTGGATGGTGATCGTCGTTGCCATTCCGGCTTTCGT
CTTTCTGCATCTGAGCCGCTTCGGGCGCTATCTTTTCGCGGTCGGCTCCAATCGCGAGGCGGCGCGCCTCTCCGGCGTCA
ACGTCGACCGTACGATCTATCTCGCCTACATCCTGTCATCGACCTGCGCCGCCTTTGTCGGGTTGCTGCTCGCCTCGCGC
ATCGGCATCGGCAACGCCACGCAAGCCGAAGGATGGGAGCTGCAGGCGATCGCGTCCTCGGTCATCGGCGGCACGAGCCT
TTTTGGTGCCGTCGGCTCGGTTCACGGCCCCCTTCTCGGCGCCTTCATTCTCGCCACGATCAACAACGGCGCCAACCTCC
TGAACGTCAACTCCTTCTGGCAGCGCATCATCACGGGCCTGCTGATCATCGTCATCGTCTATTTCGACCAGTTGCGGCGG
CGGGGCGCGCGATGA

Upstream 100 bases:

>100_bases
GGCGAGCCACGATTACCGTGGCGCTAGCCATGAGGAAGTACTCGCGCAGGCGATCAATGCCTGATCGGCCCGAGGAAAAC
CACAGCAGGGGAGGAAAACT

Downstream 100 bases:

>100_bases
TGGCCGCCCGCCCGCACCCGGCCGCAAGCAAACTTCGGAGCACCACGTGAAAGCCGTCCTATGTTCAGAGCCGGGCCACA
TCGCCCTTGTCGCCCGCGAT

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSVETVESAGPRPKKGVSILFGLTLLGLLLALWLALGVSTQAFWTPNNISNLLRQGAMTAILAVGQTFVIITAGIDLSVG
AVVGFTSVIVAWLLAAGVPLWLAIIATLAIGVLIGAFHAFGIVRMGLPPFIITLATLTSLRGIGLLITNGSTISITHDAF
TTFSRADFLGVPSLFWMVIVVAIPAFVFLHLSRFGRYLFAVGSNREAARLSGVNVDRTIYLAYILSSTCAAFVGLLLASR
IGIGNATQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNSFWQRIITGLLIIVIVYFDQLRR
RGAR

Sequences:

>Translated_324_residues
MSVETVESAGPRPKKGVSILFGLTLLGLLLALWLALGVSTQAFWTPNNISNLLRQGAMTAILAVGQTFVIITAGIDLSVG
AVVGFTSVIVAWLLAAGVPLWLAIIATLAIGVLIGAFHAFGIVRMGLPPFIITLATLTSLRGIGLLITNGSTISITHDAF
TTFSRADFLGVPSLFWMVIVVAIPAFVFLHLSRFGRYLFAVGSNREAARLSGVNVDRTIYLAYILSSTCAAFVGLLLASR
IGIGNATQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNSFWQRIITGLLIIVIVYFDQLRR
RGAR
>Mature_323_residues
SVETVESAGPRPKKGVSILFGLTLLGLLLALWLALGVSTQAFWTPNNISNLLRQGAMTAILAVGQTFVIITAGIDLSVGA
VVGFTSVIVAWLLAAGVPLWLAIIATLAIGVLIGAFHAFGIVRMGLPPFIITLATLTSLRGIGLLITNGSTISITHDAFT
TFSRADFLGVPSLFWMVIVVAIPAFVFLHLSRFGRYLFAVGSNREAARLSGVNVDRTIYLAYILSSTCAAFVGLLLASRI
GIGNATQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNSFWQRIITGLLIIVIVYFDQLRRR
GAR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=282, Percent_Identity=39.0070921985816, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1788896, Length=293, Percent_Identity=40.9556313993174, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=35.2348993288591, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=32.3170731707317, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI87082395, Length=287, Percent_Identity=36.2369337979094, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=46.09375, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=35.546875, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788471, Length=286, Percent_Identity=37.0629370629371, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693214, Length=241, Percent_Identity=33.195020746888, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787794, Length=259, Percent_Identity=30.1158301158301, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34165; Mature: 34034

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVETVESAGPRPKKGVSILFGLTLLGLLLALWLALGVSTQAFWTPNNISNLLRQGAMTA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHH
ILAVGQTFVIITAGIDLSVGAVVGFTSVIVAWLLAAGVPLWLAIIATLAIGVLIGAFHAF
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GIVRMGLPPFIITLATLTSLRGIGLLITNGSTISITHDAFTTFSRADFLGVPSLFWMVIV
HHHHHCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHH
VAIPAFVFLHLSRFGRYLFAVGSNREAARLSGVNVDRTIYLAYILSSTCAAFVGLLLASR
HHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGIGNATQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNSFW
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
QRIITGLLIIVIVYFDQLRRRGAR
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVETVESAGPRPKKGVSILFGLTLLGLLLALWLALGVSTQAFWTPNNISNLLRQGAMTA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHH
ILAVGQTFVIITAGIDLSVGAVVGFTSVIVAWLLAAGVPLWLAIIATLAIGVLIGAFHAF
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GIVRMGLPPFIITLATLTSLRGIGLLITNGSTISITHDAFTTFSRADFLGVPSLFWMVIV
HHHHHCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHH
VAIPAFVFLHLSRFGRYLFAVGSNREAARLSGVNVDRTIYLAYILSSTCAAFVGLLLASR
HHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGIGNATQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNSFW
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
QRIITGLLIIVIVYFDQLRRRGAR
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]