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The map label for this gene is yjfR [C]

Identifier: 150398288

GI number: 150398288

Start: 3240738

End: 3241751

Strand: Reverse

Name: yjfR [C]

Synonym: Smed_3094

Alternate gene names: 150398288

Gene position: 3241751-3240738 (Counterclockwise)

Preceding gene: 150398294

Following gene: 150398287

Centisome position: 85.72

GC content: 63.41

Gene sequence:

>1014_bases
ATGAAGAAAAGCGGCAATCCCTATCATGGCGGCCCGGTTTCGGACCATTTCGACGGGCTTCGATTCTACAATCCGGGCGG
CACGCCGCCGCGTGGATTAGCCGACCTCCTGCACTGGCAGTTCGGCGGTGGACGGGTGGCGTGGCCGGCTCGTTACGACA
GCCCTTTCCCCCAGGCGAAGCCCGAACTTTCCGTCGCCGGCGATCGGCTGCGTGTGACCATGGTCGGTCACGCGACCCTT
TTGATCCAGGTCGCGGGCATCAACATATTGACCGATCCGGTCTGGTCTCGTCGCGCAAGCCCCTTCACCTTTGCCGGACC
TCTTCGCCGCAACGCGCCGGGCGTCCTGATGAGCGACCTGCCGCCGATCGACCTCGTGCTGGTCACGCACAACCACTATG
ACCACCTCGACATCGATACATTGAGTACACTTCACGCCCAGCACGCACCACAGATCATCACGCCGCTCGGTAATGACGCG
ATCATTCGCCGCTCAATCCCGAATGCGGAGATCCGCGCCGTCGACTGGGGCGATCGCATGGAACTCGAAGGCGCCGTCGT
TCATGCGGAGCCCTGTCATCATTGGTCGGCCCGCCATTTGCGCGACCGGCGGATGGCGCTCTGGGCCGCCTTCGTCATCG
AAACGCCGGCCGGCAAGATCTACCATGTCGGCGATACAGGCTTTCACGACGGCATCAATTATCGGGCGGCGCGCGAGAAG
CACGGCGGCTTCAGGATCGCCAATCTGCCATTCGGGAGCTACGAACCCCGATGGTTCATGGCATCGCAGCACCAGAATCC
GGAAGAGGCGGTCATGGGTATGGTCGCTTGCGGAGCCGAACACGCGGCGGGTCATCATTGGGGCACCTTCCGGCTGACCA
ATGAAGGGGTCGAGGAGCCCCTCCGGGCGCTCGAGACAGCGCTCGACGGGGCCGGCATAGAGCGCAGCCGGTTCAGGGCA
CTGCGACCCGGAGAGGTCTTCGATGTCCCTGCCTCGTCTTTGGCAAGGGAATGA

Upstream 100 bases:

>100_bases
AGAAAAGTCAAGGATCTGCAGCGGAAACTCCTATCCGAGCTCTGTGACCGAAAGCCAAGGGCGCCTATTTACGTTTCAGG
AATCCTCTATCGAGGCAGCG

Downstream 100 bases:

>100_bases
CGCCGGCACTGGTAATTTCCGGGCTTTTCCGCCATATACAGCCCGAATGAAGGGCGCCTCCGGAACGGAAGGCCAGGTTT
GGATAATCGCGACATGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKKSGNPYHGGPVSDHFDGLRFYNPGGTPPRGLADLLHWQFGGGRVAWPARYDSPFPQAKPELSVAGDRLRVTMVGHATL
LIQVAGINILTDPVWSRRASPFTFAGPLRRNAPGVLMSDLPPIDLVLVTHNHYDHLDIDTLSTLHAQHAPQIITPLGNDA
IIRRSIPNAEIRAVDWGDRMELEGAVVHAEPCHHWSARHLRDRRMALWAAFVIETPAGKIYHVGDTGFHDGINYRAAREK
HGGFRIANLPFGSYEPRWFMASQHQNPEEAVMGMVACGAEHAAGHHWGTFRLTNEGVEEPLRALETALDGAGIERSRFRA
LRPGEVFDVPASSLARE

Sequences:

>Translated_337_residues
MKKSGNPYHGGPVSDHFDGLRFYNPGGTPPRGLADLLHWQFGGGRVAWPARYDSPFPQAKPELSVAGDRLRVTMVGHATL
LIQVAGINILTDPVWSRRASPFTFAGPLRRNAPGVLMSDLPPIDLVLVTHNHYDHLDIDTLSTLHAQHAPQIITPLGNDA
IIRRSIPNAEIRAVDWGDRMELEGAVVHAEPCHHWSARHLRDRRMALWAAFVIETPAGKIYHVGDTGFHDGINYRAAREK
HGGFRIANLPFGSYEPRWFMASQHQNPEEAVMGMVACGAEHAAGHHWGTFRLTNEGVEEPLRALETALDGAGIERSRFRA
LRPGEVFDVPASSLARE
>Mature_337_residues
MKKSGNPYHGGPVSDHFDGLRFYNPGGTPPRGLADLLHWQFGGGRVAWPARYDSPFPQAKPELSVAGDRLRVTMVGHATL
LIQVAGINILTDPVWSRRASPFTFAGPLRRNAPGVLMSDLPPIDLVLVTHNHYDHLDIDTLSTLHAQHAPQIITPLGNDA
IIRRSIPNAEIRAVDWGDRMELEGAVVHAEPCHHWSARHLRDRRMALWAAFVIETPAGKIYHVGDTGFHDGINYRAAREK
HGGFRIANLPFGSYEPRWFMASQHQNPEEAVMGMVACGAEHAAGHHWGTFRLTNEGVEEPLRALETALDGAGIERSRFRA
LRPGEVFDVPASSLARE

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=286, Percent_Identity=35.3146853146853, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI170932481, Length=286, Percent_Identity=35.3146853146853, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17543100, Length=272, Percent_Identity=35.2941176470588, Blast_Score=168, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI25148824, Length=272, Percent_Identity=35.2941176470588, Blast_Score=167, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17543102, Length=272, Percent_Identity=35.2941176470588, Blast_Score=167, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17543104, Length=271, Percent_Identity=35.0553505535055, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6325154, Length=262, Percent_Identity=30.9160305343511, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37264; Mature: 37264

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGNPYHGGPVSDHFDGLRFYNPGGTPPRGLADLLHWQFGGGRVAWPARYDSPFPQAK
CCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCEEECCCCCCCCCCCCC
PELSVAGDRLRVTMVGHATLLIQVAGINILTDPVWSRRASPFTFAGPLRRNAPGVLMSDL
CCCEECCCEEEEEEEECEEEEEEEECCEEEECCHHHCCCCCCEEECCCCCCCCCEEECCC
PPIDLVLVTHNHYDHLDIDTLSTLHAQHAPQIITPLGNDAIIRRSIPNAEIRAVDWGDRM
CCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCEEEEECCCCCE
ELEGAVVHAEPCHHWSARHLRDRRMALWAAFVIETPAGKIYHVGDTGFHDGINYRAAREK
EECEEEEECCCCCCCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHC
HGGFRIANLPFGSYEPRWFMASQHQNPEEAVMGMVACGAEHAAGHHWGTFRLTNEGVEEP
CCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHCCCCCCEEEEECCCCHHHH
LRALETALDGAGIERSRFRALRPGEVFDVPASSLARE
HHHHHHHHCCCCCCHHHHHCCCCCCEEECCHHHHCCC
>Mature Secondary Structure
MKKSGNPYHGGPVSDHFDGLRFYNPGGTPPRGLADLLHWQFGGGRVAWPARYDSPFPQAK
CCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCEEECCCCCCCCCCCCC
PELSVAGDRLRVTMVGHATLLIQVAGINILTDPVWSRRASPFTFAGPLRRNAPGVLMSDL
CCCEECCCEEEEEEEECEEEEEEEECCEEEECCHHHCCCCCCEEECCCCCCCCCEEECCC
PPIDLVLVTHNHYDHLDIDTLSTLHAQHAPQIITPLGNDAIIRRSIPNAEIRAVDWGDRM
CCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCEEEEECCCCCE
ELEGAVVHAEPCHHWSARHLRDRRMALWAAFVIETPAGKIYHVGDTGFHDGINYRAAREK
EECEEEEECCCCCCCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHC
HGGFRIANLPFGSYEPRWFMASQHQNPEEAVMGMVACGAEHAAGHHWGTFRLTNEGVEEP
CCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHCCCCCCEEEEECCCCHHHH
LRALETALDGAGIERSRFRALRPGEVFDVPASSLARE
HHHHHHHHCCCCCCHHHHHCCCCCCEEECCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]