Click here to switch to the map view.

The map label for this gene is 150396172

Identifier: 150396172

GI number: 150396172

Start: 1024832

End: 1025284

Strand: Direct

Name: 150396172

Synonym: Smed_0949

Alternate gene names: NA

Gene position: 1024832-1025284 (Clockwise)

Preceding gene: 150396171

Following gene: 150396179

Centisome position: 27.1

GC content: 61.81

Gene sequence:

>453_bases
ATGGCGGGGTTCAGTCTGCGGGATTTGTTTGGCCGGGGGGCCCGGCTTGCGGCCATTGCCCTTCTCCTCGCCGCTCCGGT
GGTTTCAACCACAGAGCCCGCGCAGGCGGCCCGCCTTCCCAATGCCGTCGCGGTGTTCTCGGGCATCGACAAGATCACCG
GCCGTATTACCAGCTTTGACGTCTATATCGGTGAAACGGTGCAGTTCGGCGCTCTGCAGGTAACTCCGCGCGTCTGCTAC
AGCCGGGACGAAACAGAAGCGCCGAAGACGACCACCTTCGTGGAAGTCGACGAGATCACCCTCGACCGAAAGATCCGCCG
TATTTTTACCGGTTGGATGTTTGCGGACAGCCCCGGCCTGAATGCCGTCGAGCACCCCGTCTATGACGTCTGGCTGCAGT
CCTGCAAGACGACGTCCGAAGTTCCGCCGCCGGACACGGCAGAGAAACAATAG

Upstream 100 bases:

>100_bases
CCGGTCTAACGGATTGTAACGATCACGGCGCAGCCACATTTCGGGTTTAGCGCCTGAAGTCCATCCAAGCTGAAAAGTAA
TGTGCGGGGGATTGTCGGTA

Downstream 100 bases:

>100_bases
ATCCTAACCGCGGATTTGATTTGATTTCTGTCAGGCGGCGGGTGGGTGTCTTTCGACCGAGCAGCCCTCTTAGAAACTGT
GCGATAGCGACGTCGGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Signal Peptide; Signal Peptide Protein

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MAGFSLRDLFGRGARLAAIALLLAAPVVSTTEPAQAARLPNAVAVFSGIDKITGRITSFDVYIGETVQFGALQVTPRVCY
SRDETEAPKTTTFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPVYDVWLQSCKTTSEVPPPDTAEKQ

Sequences:

>Translated_150_residues
MAGFSLRDLFGRGARLAAIALLLAAPVVSTTEPAQAARLPNAVAVFSGIDKITGRITSFDVYIGETVQFGALQVTPRVCY
SRDETEAPKTTTFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPVYDVWLQSCKTTSEVPPPDTAEKQ
>Mature_149_residues
AGFSLRDLFGRGARLAAIALLLAAPVVSTTEPAQAARLPNAVAVFSGIDKITGRITSFDVYIGETVQFGALQVTPRVCYS
RDETEAPKTTTFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPVYDVWLQSCKTTSEVPPPDTAEKQ

Specific function: Unknown

COG id: COG4765

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16377; Mature: 16246

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGFSLRDLFGRGARLAAIALLLAAPVVSTTEPAQAARLPNAVAVFSGIDKITGRITSFD
CCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEE
VYIGETVQFGALQVTPRVCYSRDETEAPKTTTFVEVDEITLDRKIRRIFTGWMFADSPGL
EEECCEEECCEEEECHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEECCCCC
NAVEHPVYDVWLQSCKTTSEVPPPDTAEKQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGFSLRDLFGRGARLAAIALLLAAPVVSTTEPAQAARLPNAVAVFSGIDKITGRITSFD
CCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEE
VYIGETVQFGALQVTPRVCYSRDETEAPKTTTFVEVDEITLDRKIRRIFTGWMFADSPGL
EEECCEEECCEEEECHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEECCCCC
NAVEHPVYDVWLQSCKTTSEVPPPDTAEKQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA