| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150395979
Identifier: 150395979
GI number: 150395979
Start: 811404
End: 812519
Strand: Direct
Name: 150395979
Synonym: Smed_0755
Alternate gene names: NA
Gene position: 811404-812519 (Clockwise)
Preceding gene: 150395978
Following gene: 150395980
Centisome position: 21.45
GC content: 60.13
Gene sequence:
>1116_bases ATGAATGAAGCTTTTCAGAGAGACTGTATTGAAATTCTCGCAGACAAGGTCAAGCGCGGCGAGATGACCCGCCGGCGCTT TGCCCAGCTCGCCGCGATGCTCGTCGCCGGGGCGCCGCTGGCGCTCCGGGCAGGCGGTGCCGCGGCGCAGGCCAAGCAGC TTGTTTTCGTAAACTGGGGCGGAGATGCCATCACCGCCTATGACAAGGCTTACGGCCAGCCGTTTCTGGAGGAAGCCGGA ATCACGGTCAGGCAAGACGGTTCGGGGCCGACCGAAGGTGCCATCACCGCCCAGTTCAAGAGTGGGGCTCCGAGCTGGGA TATCGTCGATGCGGATCCCTTCTCGGCGATAACGCTGGGCAAGCAGGGGATGATCGAGGAAATCGACTACTCTGTTGTCG ACAAGAATAAAATGCGTCCGGGTTTTGGCTGGGACTATGCCGCGTCGAGCTATTTCTTCTCCTACGTCATCGCCTACGAT TCCGAAAAATACGGCGACAATCCTCCCAAAGGCATGGCCGACTTCTTCGATGTGAATGCCTTCCCCGGCAAGCGCTCCCT CTACAAGTGGGGCAGCGCTATGTGGGAAGCGGCCCTTCTCGGTGACGGCGTCGCTCCCGAAAAGCTCTACCCGCTCGACC TCAAACGCGCCCATGACAAGATCGCCGCATTCAAGGAAAACGTCGTCGCCTATTGGGGCGGCGGCTCTGAAAGCCAGTCG CTCCTTCTCGACGGCGAGGCCTCAATGGCCCTCATCTGGTCGACCCGTGCCTCGCTGATCGAGCAGGACTCGGGTGGCCG CATCAAATTCATCTGGGATCAGGGCCTGCTGTCTCCGGGGGCCATGGCCGTCATAAAGGGCAACCCCGGCGGCCGCGACG CGGCGATGAAATTCATCGCAAGCGCTCAGGACCCGCAGAAGCAGCTTGTCATGTTCGACCTGCTTCGGCAGGGACCGGCA AATCCTGCTGCCGACGCGCTTATCCCCGAGGAGCAGAAGCGCCAGAATCCGGTCGATCCTGCGAATATGAGCAAGCAGAT ACCGCTTAACATGGAATGGTACGCAGAGCATTACGGGCCGGCGCTCAACGAATTCACCAAAATCGTTTCCGCCTGA
Upstream 100 bases:
>100_bases GACATGGCCCGCCGGAAAAGGCTTTCTGTTGCCGGCCTCCGGCTGAAACACCACAGACCGGCAGACGCCTATTGTGCAGT GATAAAAAAGGGGAACGACG
Downstream 100 bases:
>100_bases GCCGCCGATGCTCGCGCGCTCCCACAATCTTGGCGCGGCGCTCCTTCTGGCGCCGCTTCTCCTGCTCCTTGCCGTGGCAT ACGGCATCCCGTTTCTTGGC
Product: ABC transporter binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MNEAFQRDCIEILADKVKRGEMTRRRFAQLAAMLVAGAPLALRAGGAAAQAKQLVFVNWGGDAITAYDKAYGQPFLEEAG ITVRQDGSGPTEGAITAQFKSGAPSWDIVDADPFSAITLGKQGMIEEIDYSVVDKNKMRPGFGWDYAASSYFFSYVIAYD SEKYGDNPPKGMADFFDVNAFPGKRSLYKWGSAMWEAALLGDGVAPEKLYPLDLKRAHDKIAAFKENVVAYWGGGSESQS LLLDGEASMALIWSTRASLIEQDSGGRIKFIWDQGLLSPGAMAVIKGNPGGRDAAMKFIASAQDPQKQLVMFDLLRQGPA NPAADALIPEEQKRQNPVDPANMSKQIPLNMEWYAEHYGPALNEFTKIVSA
Sequences:
>Translated_371_residues MNEAFQRDCIEILADKVKRGEMTRRRFAQLAAMLVAGAPLALRAGGAAAQAKQLVFVNWGGDAITAYDKAYGQPFLEEAG ITVRQDGSGPTEGAITAQFKSGAPSWDIVDADPFSAITLGKQGMIEEIDYSVVDKNKMRPGFGWDYAASSYFFSYVIAYD SEKYGDNPPKGMADFFDVNAFPGKRSLYKWGSAMWEAALLGDGVAPEKLYPLDLKRAHDKIAAFKENVVAYWGGGSESQS LLLDGEASMALIWSTRASLIEQDSGGRIKFIWDQGLLSPGAMAVIKGNPGGRDAAMKFIASAQDPQKQLVMFDLLRQGPA NPAADALIPEEQKRQNPVDPANMSKQIPLNMEWYAEHYGPALNEFTKIVSA >Mature_371_residues MNEAFQRDCIEILADKVKRGEMTRRRFAQLAAMLVAGAPLALRAGGAAAQAKQLVFVNWGGDAITAYDKAYGQPFLEEAG ITVRQDGSGPTEGAITAQFKSGAPSWDIVDADPFSAITLGKQGMIEEIDYSVVDKNKMRPGFGWDYAASSYFFSYVIAYD SEKYGDNPPKGMADFFDVNAFPGKRSLYKWGSAMWEAALLGDGVAPEKLYPLDLKRAHDKIAAFKENVVAYWGGGSESQS LLLDGEASMALIWSTRASLIEQDSGGRIKFIWDQGLLSPGAMAVIKGNPGGRDAAMKFIASAQDPQKQLVMFDLLRQGPA NPAADALIPEEQKRQNPVDPANMSKQIPLNMEWYAEHYGPALNEFTKIVSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40402; Mature: 40402
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEAFQRDCIEILADKVKRGEMTRRRFAQLAAMLVAGAPLALRAGGAAAQAKQLVFVNWG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCEEEEEEEC GDAITAYDKAYGQPFLEEAGITVRQDGSGPTEGAITAQFKSGAPSWDIVDADPFSAITLG CCEEEHHHHHHCCCHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCEEECC KQGMIEEIDYSVVDKNKMRPGFGWDYAASSYFFSYVIAYDSEKYGDNPPKGMADFFDVNA CCCCHHHHCHHHHCCCCCCCCCCCCHHHHHHEEEEEEEECCHHCCCCCCCCCHHHHCCCC FPGKRSLYKWGSAMWEAALLGDGVAPEKLYPLDLKRAHDKIAAFKENVVAYWGGGSESQS CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCE LLLDGEASMALIWSTRASLIEQDSGGRIKFIWDQGLLSPGAMAVIKGNPGGRDAAMKFIA EEEECCCCEEEEEEHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH SAQDPQKQLVMFDLLRQGPANPAADALIPEEQKRQNPVDPANMSKQIPLNMEWYAEHYGP CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCH ALNEFTKIVSA HHHHHHHHHCC >Mature Secondary Structure MNEAFQRDCIEILADKVKRGEMTRRRFAQLAAMLVAGAPLALRAGGAAAQAKQLVFVNWG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCCCEEEEEEEC GDAITAYDKAYGQPFLEEAGITVRQDGSGPTEGAITAQFKSGAPSWDIVDADPFSAITLG CCEEEHHHHHHCCCHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCEEECC KQGMIEEIDYSVVDKNKMRPGFGWDYAASSYFFSYVIAYDSEKYGDNPPKGMADFFDVNA CCCCHHHHCHHHHCCCCCCCCCCCCHHHHHHEEEEEEEECCHHCCCCCCCCCHHHHCCCC FPGKRSLYKWGSAMWEAALLGDGVAPEKLYPLDLKRAHDKIAAFKENVVAYWGGGSESQS CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCE LLLDGEASMALIWSTRASLIEQDSGGRIKFIWDQGLLSPGAMAVIKGNPGGRDAAMKFIA EEEECCCCEEEEEEHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH SAQDPQKQLVMFDLLRQGPANPAADALIPEEQKRQNPVDPANMSKQIPLNMEWYAEHYGP CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCH ALNEFTKIVSA HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA