Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 150395860

GI number: 150395860

Start: 681938

End: 682393

Strand: Direct

Name: ccmH [H]

Synonym: Smed_0636

Alternate gene names: 150395860

Gene position: 681938-682393 (Clockwise)

Preceding gene: 150395859

Following gene: 150395861

Centisome position: 18.03

GC content: 63.38

Gene sequence:

>456_bases
ATGATCCGGCTGCTCCTCGCACTTCTCCTCTTGCTGGCATCCGCGATGCCGGGTCTCGCCGTGAATCCTGACGAGGTGCT
CGCAGATCCGGCGCTTGAAACCCGCGCGCGAGCAATCTCTGCGCAGCTTCGCTGCATGGTTTGCCAGAACCAGTCGATCG
ACGACTCCAACGCCGAACTCGCAAAGGATCTGCGGGTGCTCGTGCGAGAGCGCCTGAAGAGCGGCGATACCGACGAAGCC
GTGATCTCCTACGTCGTCTCACGCTACGGCGAATTTGTTCTCCTCAATCCCCGCTTCGAAGCCAGGACGCTCGTCCTCTG
GGGCATGCCTGCTATTCTGCTTGTGATCGGCGTCATCACCCTCGTCCTGGCCGCGCGCCGCCGCGGCGCAAGGGTCCCGG
CCGCACCGCTTTCCGACGAAGAACAGGAAAGGCTGGACAGGCTTCTGCGCCCCTGA

Upstream 100 bases:

>100_bases
TCGTGATGATGGCCGGCGGAATAGTCTCGCTCACCGACAGGCGTCTTCGCGTGGGCGCACCGGCGCGTGCCAGAAGGCCG
CTTGCGGTGGGTGCTGCGGA

Downstream 100 bases:

>100_bases
TCCAACCGCAGCCGATTGCCTGCTTCCGCCGGAACATTAACAAAAATTCATCTGCCGGACAGAACGCAGTAAGGTCCCGT
TCGTTACTTGTAACGGTACA

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MIRLLLALLLLLASAMPGLAVNPDEVLADPALETRARAISAQLRCMVCQNQSIDDSNAELAKDLRVLVRERLKSGDTDEA
VISYVVSRYGEFVLLNPRFEARTLVLWGMPAILLVIGVITLVLAARRRGARVPAAPLSDEEQERLDRLLRP

Sequences:

>Translated_151_residues
MIRLLLALLLLLASAMPGLAVNPDEVLADPALETRARAISAQLRCMVCQNQSIDDSNAELAKDLRVLVRERLKSGDTDEA
VISYVVSRYGEFVLLNPRFEARTLVLWGMPAILLVIGVITLVLAARRRGARVPAAPLSDEEQERLDRLLRP
>Mature_151_residues
MIRLLLALLLLLASAMPGLAVNPDEVLADPALETRARAISAQLRCMVCQNQSIDDSNAELAKDLRVLVRERLKSGDTDEA
VISYVVSRYGEFVLLNPRFEARTLVLWGMPAILLVIGVITLVLAARRRGARVPAAPLSDEEQERLDRLLRP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=118, Percent_Identity=38.9830508474576, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16683; Mature: 16683

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLLALLLLLASAMPGLAVNPDEVLADPALETRARAISAQLRCMVCQNQSIDDSNAEL
CHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
AKDLRVLVRERLKSGDTDEAVISYVVSRYGEFVLLNPRFEARTLVLWGMPAILLVIGVIT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
LVLAARRRGARVPAAPLSDEEQERLDRLLRP
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIRLLLALLLLLASAMPGLAVNPDEVLADPALETRARAISAQLRCMVCQNQSIDDSNAEL
CHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
AKDLRVLVRERLKSGDTDEAVISYVVSRYGEFVLLNPRFEARTLVLWGMPAILLVIGVIT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
LVLAARRRGARVPAAPLSDEEQERLDRLLRP
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]