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The map label for this gene is yqfA [H]

Identifier: 150395829

GI number: 150395829

Start: 654254

End: 654916

Strand: Direct

Name: yqfA [H]

Synonym: Smed_0605

Alternate gene names: 150395829

Gene position: 654254-654916 (Clockwise)

Preceding gene: 150395828

Following gene: 150395831

Centisome position: 17.3

GC content: 61.09

Gene sequence:

>663_bases
GTGAAGGGACCTGGCGTCAAATGGGACTACGACCGCTCGGAGGTGATCGCCGATGGAATTGTCCACGGCATCGGGCTCTC
GGCGGCGCTCGTCGGTGTTACCGCCTTGATCTTTTACGCCACCGTGTGGAGTACGTCCGGTCAGTTGGCCGCGGCTTCGA
TCTATGGCGGCGGACTCATCGCGGCCCTTTCGGTGTCGTTTATCTATAATCTTTTTCCAGCCGGCCGGGCGAAATGGCTC
CTGCGCCGGCTTGACCACTCCGGGATTTTCGTGCTGATCGCTGCAACTTACACGCCGTTTCTGCAGCGCGGCTGGGACGA
TCCGTTTCTCTTCTCGATGCTCGTCGCCATCTGGCTTATCGCGGCTGCCGGTATTGCCCTGAAGTGCCTTCTGCCGGGGC
GTTTCGATCGGCTGGCGATTCTGCTCTACCTCGCAATGGGCTGGAGCGGGCTGCTCGCCGCGGAATCCCTCTTTACGGCC
TTGAGCGCAACGACGCTTACTCTCATCGTTGCCGGTGGCATCATCTATTCGGTCGGCGTCATCTTCCATGTCTGGGAGCG
TCTGCGCTACCAGAACGCCATCTGGCACGGCTTCGTGGTGGCGGGGGCCGCGGTGCACTATTCCGCAGTTTTGACCTGCA
TCAGCGGAGGCGCAGCATCTTAG

Upstream 100 bases:

>100_bases
CGGGGGGTGATGCGCGTCCGCTTTCGCCGAAGTTCGTCGGAAGCTCGTCGCATTTGATCGAGCCCGTGCGTTGCGTGTCG
CTGCAGAGAGCGGAGGGGCC

Downstream 100 bases:

>100_bases
ATCGGGCCGGGCTTGCGGAAAACCGTATGCGGTTTTCTGCCTCTCATCGCGCGGTGCGCATCGCCATCTAAGCGGCTCAA
TCTGAAGCCGGCTGGCATCC

Product: Hly-III family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKGPGVKWDYDRSEVIADGIVHGIGLSAALVGVTALIFYATVWSTSGQLAAASIYGGGLIAALSVSFIYNLFPAGRAKWL
LRRLDHSGIFVLIAATYTPFLQRGWDDPFLFSMLVAIWLIAAAGIALKCLLPGRFDRLAILLYLAMGWSGLLAAESLFTA
LSATTLTLIVAGGIIYSVGVIFHVWERLRYQNAIWHGFVVAGAAVHYSAVLTCISGGAAS

Sequences:

>Translated_220_residues
MKGPGVKWDYDRSEVIADGIVHGIGLSAALVGVTALIFYATVWSTSGQLAAASIYGGGLIAALSVSFIYNLFPAGRAKWL
LRRLDHSGIFVLIAATYTPFLQRGWDDPFLFSMLVAIWLIAAAGIALKCLLPGRFDRLAILLYLAMGWSGLLAAESLFTA
LSATTLTLIVAGGIIYSVGVIFHVWERLRYQNAIWHGFVVAGAAVHYSAVLTCISGGAAS
>Mature_220_residues
MKGPGVKWDYDRSEVIADGIVHGIGLSAALVGVTALIFYATVWSTSGQLAAASIYGGGLIAALSVSFIYNLFPAGRAKWL
LRRLDHSGIFVLIAATYTPFLQRGWDDPFLFSMLVAIWLIAAAGIALKCLLPGRFDRLAILLYLAMGWSGLLAAESLFTA
LSATTLTLIVAGGIIYSVGVIFHVWERLRYQNAIWHGFVVAGAAVHYSAVLTCISGGAAS

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=205, Percent_Identity=30.7317073170732, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI154759275, Length=203, Percent_Identity=25.615763546798, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1789266, Length=211, Percent_Identity=39.8104265402844, Blast_Score=161, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24640324, Length=243, Percent_Identity=29.6296296296296, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23440; Mature: 23440

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGPGVKWDYDRSEVIADGIVHGIGLSAALVGVTALIFYATVWSTSGQLAAASIYGGGLI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCHHH
AALSVSFIYNLFPAGRAKWLLRRLDHSGIFVLIAATYTPFLQRGWDDPFLFSMLVAIWLI
HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
AAAGIALKCLLPGRFDRLAILLYLAMGWSGLLAAESLFTALSATTLTLIVAGGIIYSVGV
HHHHHHHEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFHVWERLRYQNAIWHGFVVAGAAVHYSAVLTCISGGAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKGPGVKWDYDRSEVIADGIVHGIGLSAALVGVTALIFYATVWSTSGQLAAASIYGGGLI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCHHH
AALSVSFIYNLFPAGRAKWLLRRLDHSGIFVLIAATYTPFLQRGWDDPFLFSMLVAIWLI
HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
AAAGIALKCLLPGRFDRLAILLYLAMGWSGLLAAESLFTALSATTLTLIVAGGIIYSVGV
HHHHHHHEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFHVWERLRYQNAIWHGFVVAGAAVHYSAVLTCISGGAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]