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The map label for this gene is 150395814

Identifier: 150395814

GI number: 150395814

Start: 638442

End: 638888

Strand: Direct

Name: 150395814

Synonym: Smed_0590

Alternate gene names: NA

Gene position: 638442-638888 (Clockwise)

Preceding gene: 150395813

Following gene: 150395815

Centisome position: 16.88

GC content: 60.4

Gene sequence:

>447_bases
ATGAAGATACGAGCTCTTATGCTTGCCGCGGCCCTGGCGGGCCTGGGCGTGACCGCCGTCACGGCGGCCGACGAGCCGCA
GGCGGTGCGCCAGCAATTGATGAAAAAAGTCGGGCAGGCCACAGGTGCGCTCAGCGGCATCGCCAAGGGTGAAAAGCCCT
ATGACGCCGAGATCGTAAAAGCTTCGCTGGCGACGATCAGCGAAACGGTGAAAGTCTTCCCGGATCACTTCCCGGCTGGT
TCCGAGACAGGGATGGAAACCGAAGCGAGCCCGAAGATCTGGGAGAATATGGCGGACTTCAAGGCGAAGGCCGCCAAGCT
CGGGGGGGACGCAGAAAAAATCCTTGCTGAATTGCCCGCGGATCAGGCCGGCGTCGGTGCTGCACTCGGCATCATCGGAA
AAGACTGCAGCAGCTGTCACGAGAGCTATCGGATCAAGAAGGATTGA

Upstream 100 bases:

>100_bases
CAAGCACATCAAGAAAATGTTACTTCCGTAGAGAAGCCAAAATGCCATCATGCCGGCGCTTCAACAGTACGCCGCAGAAG
CGGTCAGACCGGAGATCATG

Downstream 100 bases:

>100_bases
TGATCAGGCAGTTGTGTAACTCCGTTTTGGAACCGCGCCGCCCAGCCGGCGCGGACCTCTTTGCAACGCAGGTCGAAAGG
CCCTCCGGCCGCTGCCATTG

Product: cytochrome c class II

Products: NA

Alternate protein names: Cytochrome c556 [H]

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKIRALMLAAALAGLGVTAVTAADEPQAVRQQLMKKVGQATGALSGIAKGEKPYDAEIVKASLATISETVKVFPDHFPAG
SETGMETEASPKIWENMADFKAKAAKLGGDAEKILAELPADQAGVGAALGIIGKDCSSCHESYRIKKD

Sequences:

>Translated_148_residues
MKIRALMLAAALAGLGVTAVTAADEPQAVRQQLMKKVGQATGALSGIAKGEKPYDAEIVKASLATISETVKVFPDHFPAG
SETGMETEASPKIWENMADFKAKAAKLGGDAEKILAELPADQAGVGAALGIIGKDCSSCHESYRIKKD
>Mature_148_residues
MKIRALMLAAALAGLGVTAVTAADEPQAVRQQLMKKVGQATGALSGIAKGEKPYDAEIVKASLATISETVKVFPDHFPAG
SETGMETEASPKIWENMADFKAKAAKLGGDAEKILAELPADQAGVGAALGIIGKDCSSCHESYRIKKD

Specific function: Low-spin monoheme cytochrome c [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 15357; Mature: 15357

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRALMLAAALAGLGVTAVTAADEPQAVRQQLMKKVGQATGALSGIAKGEKPYDAEIVK
CCHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ASLATISETVKVFPDHFPAGSETGMETEASPKIWENMADFKAKAAKLGGDAEKILAELPA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
DQAGVGAALGIIGKDCSSCHESYRIKKD
CCCCCHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MKIRALMLAAALAGLGVTAVTAADEPQAVRQQLMKKVGQATGALSGIAKGEKPYDAEIVK
CCHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ASLATISETVKVFPDHFPAGSETGMETEASPKIWENMADFKAKAAKLGGDAEKILAELPA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
DQAGVGAALGIIGKDCSSCHESYRIKKD
CCCCCHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6309523 [H]