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The map label for this gene is yhjC [H]

Identifier: 150395293

GI number: 150395293

Start: 73489

End: 74397

Strand: Direct

Name: yhjC [H]

Synonym: Smed_0065

Alternate gene names: 150395293

Gene position: 73489-74397 (Clockwise)

Preceding gene: 150395287

Following gene: 150395298

Centisome position: 1.94

GC content: 61.61

Gene sequence:

>909_bases
ATGGACCAGCTTACGGCCATGCGCGCTTTTCTTCGGGTGGTGGAGACGGGGAATTTCACCCGCGCTTCCGTCTCTCTCAA
TATGCCGAAGGCGACCGTCACCAATCTCATCCAGGGGCTGGAGGCGCATTTGCGGACGAAACTCCTCAACCGCACAACGA
GACGCGTCCTCGTCACGCCCGATGGCGCGCTCTACTACGAGCGCGCGGCACGGTTGCTTTCCGACCTGGATGAACTCGAC
GGCAGCCTTTCGACCGCCCAGAGCCTGCCGAAGGGAAGACTGAGGGTCGAGACGGCGAGCGCCTTCGCCAATCTGGTCAT
CATTCCGGCGCTTCCCGAGTTCCACAACAAATACCCTGACATCCAGATCGATCTCGGCGTGTCCGATCGCACGATCGACT
ATCTTGCGGAGAATGTCGATTGCGCTATCCGCGCCGGCACCCTTACCGATCAATCGCTGATCGCCCGGCGCATCACCGAA
ATGCAGTTCGTCGCCTGCGCTTCCCGGGACTTTCTCGAGCGGCATCCGGTGCCGCAGCATCCTTCCGACCTGGAGAAGAA
TTGCTATGTCGTCGGCTACTTCCTGCCGAAAACCGGTCAGCAGATGCCGTTCCATTTCCGGCGGGGAAACGAGGAGATAG
AGGTCAGTGGCCGCTATACGGTGGCCGCGAACGAGTCGACCAGCTACATCGCCGCCGCCCGGGCGGGGCTGGGGGTCATC
CAGGCGCCGCTCTTCATGGTACGTGAGGACCTTCGCAACGGAACGATGCTTCCGGTTCTTCCCGACTGGCAGGTCGATCC
GATGCCGGTTTATCTCGTCTATCCGCCGAACCGTCACTTGAGCAGCCGCCTGCGTGTGTTCGCCGACTGGGTTGTGAAGG
TGATGGCGCAGTCGCAGAACGGCGCGTGA

Upstream 100 bases:

>100_bases
ACAACTCGCGATGTTTGCAGCATAACATTGTCTTCTGTCTGGAATAGTCTGTGGGTTCTGATTACACTATTCGGTATTTC
GAACAATTCGGTTATTGAAA

Downstream 100 bases:

>100_bases
CGACCGTTCTCAACGACCTGCGTCGCAGCGTTCGCGCGCGGGATCGAGCTCGCCGAAATGGATCTCCGCCCAGCGGCCGA
GTACGATCAACGCTTCGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELD
GSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPDIQIDLGVSDRTIDYLAENVDCAIRAGTLTDQSLIARRITE
MQFVACASRDFLERHPVPQHPSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVI
QAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVVKVMAQSQNGA

Sequences:

>Translated_302_residues
MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELD
GSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPDIQIDLGVSDRTIDYLAENVDCAIRAGTLTDQSLIARRITE
MQFVACASRDFLERHPVPQHPSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVI
QAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVVKVMAQSQNGA
>Mature_302_residues
MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELD
GSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPDIQIDLGVSDRTIDYLAENVDCAIRAGTLTDQSLIARRITE
MQFVACASRDFLERHPVPQHPSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVI
QAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVVKVMAQSQNGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=39.202657807309, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1789639, Length=309, Percent_Identity=28.4789644012945, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.1525423728814, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=28.719723183391, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=29.3333333333333, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789440, Length=307, Percent_Identity=27.0358306188925, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=27.7966101694915, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1790011, Length=276, Percent_Identity=24.2753623188406, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=25.5892255892256, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=24.9146757679181, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=30.1724137931034, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=248, Percent_Identity=23.3870967741935, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33804; Mature: 33804

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP
CCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DGALYYERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPD
CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEHHHHEEEEEEECCHHHHCCCCC
IQIDLGVSDRTIDYLAENVDCAIRAGTLTDQSLIARRITEMQFVACASRDFLERHPVPQH
EEEEECCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVI
CCCCCCCCEEEEEEECCCCCCCCCCEECCCCEEEECCEEEEEECCCCHHHHHHHHCCHHH
QAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVVKVMAQSQN
HHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
GA
CC
>Mature Secondary Structure
MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP
CCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DGALYYERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPD
CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEHHHHEEEEEEECCHHHHCCCCC
IQIDLGVSDRTIDYLAENVDCAIRAGTLTDQSLIARRITEMQFVACASRDFLERHPVPQH
EEEEECCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVI
CCCCCCCCEEEEEEECCCCCCCCCCEECCCCEEEECCEEEEEECCCCHHHHHHHHCCHHH
QAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVVKVMAQSQN
HHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]