Definition | Staphylococcus aureus subsp. aureus JH1, complete genome. |
---|---|
Accession | NC_009632 |
Length | 2,906,507 |
Click here to switch to the map view.
The map label for this gene is atl [H]
Identifier: 150392846
GI number: 150392846
Start: 398113
End: 399987
Strand: Direct
Name: atl [H]
Synonym: SaurJH1_0372
Alternate gene names: 150392846
Gene position: 398113-399987 (Clockwise)
Preceding gene: 150392845
Following gene: 150392847
Centisome position: 13.7
GC content: 38.19
Gene sequence:
>1875_bases ATGGGATTACCTAACCCAAAGACTAGAAAGCCTACAGCTAGTGAAGTGGTGGAGTGGGCAAAGTCGAATATTGGTAAGAG GATTAATATAGATAATTATCGGGGCAGTCAATGTTGGGATACACCTAACTTTATTTTTAAAAGATATTGGGGTTTTGTAA CATGGGGCAATGCTAAGGATATGGCTAATTACAGATATCCTAAGGGTTTCCGATTCTATCGTTATTCATCTGGATTTGTA CCGGAACCTGGAGACATCGCAGTTTGGCACCCTGGCAACGGAATAGGTTCGGACGGACACACCGCAATAGTAGTAGGACC ATCTAATAAAAGTTATTTTTATAGCGTTGACCAAAACTGGGTTAATTCTAATAGTTGGACAGGTTCTCCGGGAAGTTTAG TAAGACACCCTTATGTAAGTGTTACAGGCTTTGTCAGACCTCCATATTCAAAAGATACTAGCAAACCTAGTAGTACTGAT ACAAGTTCAGCATCAAAAGCCAATGACTCAACAATTACTGGCGAAGCGAAGAAACCGCAATTTAAAGAAGTTAAAACAGT AAAATACACTGCTTACAGCAATGTTTTAGATAAAGAAGAGCACTTCATTGATCATATAGTTGTAATGGGTGATGAACGCT CAGATATTCAAGGGTTATATATAAAAGAATCAATGCATATGCGTTCTGTAGACGAACTGTATACGCAAAGAAATAAGTTT ATAAGCGATTATGAAATACCGCATTTATATGTCGATAGAGAGGCTACATGGCTTGCTAGACCAACCAATTTTGATGACCC GCGTCACCCTAATTGGCTAGTTATTGAAGTATGTGGTGGTCAAACAGATAGCAAACGACAATTCTTATTGAATCAAATAC AAGCGTTAATACGTGGTGTTTGGTTATTGTCAGGGATTGATAAAAACTTATCTGAAACGACGTTAAAGGTAGACCCTAAT ATTTGGCGTAGTATGAAAGATTTAATTAATTACGACTTGATTAAGCAAGGTATACCGGATAACGCAAAGTATGAGCAAGT TAAAAAGAAAATGCTTGAGACATACATTAAACGAGATATATTGACACGAGAAAATATAAAAGAAGTAACGACAAAAACAA CAATAAGAATTAGTGATAAAACATCAGTTGACAGTGCGTCCACACGAGGCCCTACTCCATCAGACGAAAAACCAAGCATC GTTACTGAAACAAGTCCATTCACATTCCAGCAAGCACTGGATAGACAAATGTCTAGGGGTAACCCGAAAAAATCTCATAC ATGGGGCTGGGCTAATGCAACACGAGCACAAACGAGCTCGGCAATGAATGTTAAGCGAATATGGGAAAGTAACACGCAAT GCTATCAAATGCTTAATTTAGGCAAGTATCAAGGCATTTCAGTTAGTGCGCTTAACAAAATACTTAAAGGAAAAGGAACG CTCGACGGACAAGGCAAAGCATTCGCGGAAGCTTGTAAGAAAAACAACATTAACGAAATTTATTTGATCGCGCACGCTTT CTTAGAAAGTGGATACGGAACAAGTAACTTCGCTAGTGGTAGATACGGTGCATATAATTACTTCGGTATTGGTGCATTCG ACAACGACCCTGATTATGCAATGAAATTTGCTAAGAATAAAGGTTGGACATCTCCAGCAAAAGCAATCATGGGCGGTGCT AGCTTCGTAAGAAAGGATTACATCAATAAAGGTCAAAACACATTGTACAGAATCAGATGGAATCCTAAGAATCCAGCTAC GCACCAATACGCTACTGCTATAGAGTGGTGCCAACATCAAGCTAGTACAATAGCTAAGCTATATAAACAAATCGGCTTAA AAGGTATCTATTTTATAAGAGATAAATATAAATAA
Upstream 100 bases:
>100_bases ATAGCTTCTGGGCGTGCTTCTGGTTTGGTAAATGTAAATAACAGTTAAGAGTCAGTGCTTCGGCACTGGCTTTTTATTTT GATTGAAATGAGGTGCATAC
Downstream 100 bases:
>100_bases AGAGGTGTATAAATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGACATTGGCTG TCGATTTTACACTGAAGATG
Product: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
Products: NA
Alternate protein names: AtlE; N-acetylmuramoyl-L-alanine amidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [H]
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MGLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNFIFKRYWGFVTWGNAKDMANYRYPKGFRFYRYSSGFV PEPGDIAVWHPGNGIGSDGHTAIVVGPSNKSYFYSVDQNWVNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTD TSSASKANDSTITGEAKKPQFKEVKTVKYTAYSNVLDKEEHFIDHIVVMGDERSDIQGLYIKESMHMRSVDELYTQRNKF ISDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIEVCGGQTDSKRQFLLNQIQALIRGVWLLSGIDKNLSETTLKVDPN IWRSMKDLINYDLIKQGIPDNAKYEQVKKKMLETYIKRDILTRENIKEVTTKTTIRISDKTSVDSASTRGPTPSDEKPSI VTETSPFTFQQALDRQMSRGNPKKSHTWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGISVSALNKILKGKGT LDGQGKAFAEACKKNNINEIYLIAHAFLESGYGTSNFASGRYGAYNYFGIGAFDNDPDYAMKFAKNKGWTSPAKAIMGGA SFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFIRDKYK
Sequences:
>Translated_624_residues MGLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNFIFKRYWGFVTWGNAKDMANYRYPKGFRFYRYSSGFV PEPGDIAVWHPGNGIGSDGHTAIVVGPSNKSYFYSVDQNWVNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTD TSSASKANDSTITGEAKKPQFKEVKTVKYTAYSNVLDKEEHFIDHIVVMGDERSDIQGLYIKESMHMRSVDELYTQRNKF ISDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIEVCGGQTDSKRQFLLNQIQALIRGVWLLSGIDKNLSETTLKVDPN IWRSMKDLINYDLIKQGIPDNAKYEQVKKKMLETYIKRDILTRENIKEVTTKTTIRISDKTSVDSASTRGPTPSDEKPSI VTETSPFTFQQALDRQMSRGNPKKSHTWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGISVSALNKILKGKGT LDGQGKAFAEACKKNNINEIYLIAHAFLESGYGTSNFASGRYGAYNYFGIGAFDNDPDYAMKFAKNKGWTSPAKAIMGGA SFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFIRDKYK >Mature_623_residues GLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNFIFKRYWGFVTWGNAKDMANYRYPKGFRFYRYSSGFVP EPGDIAVWHPGNGIGSDGHTAIVVGPSNKSYFYSVDQNWVNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTDT SSASKANDSTITGEAKKPQFKEVKTVKYTAYSNVLDKEEHFIDHIVVMGDERSDIQGLYIKESMHMRSVDELYTQRNKFI SDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIEVCGGQTDSKRQFLLNQIQALIRGVWLLSGIDKNLSETTLKVDPNI WRSMKDLINYDLIKQGIPDNAKYEQVKKKMLETYIKRDILTRENIKEVTTKTTIRISDKTSVDSASTRGPTPSDEKPSIV TETSPFTFQQALDRQMSRGNPKKSHTWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGISVSALNKILKGKGTL DGQGKAFAEACKKNNINEIYLIAHAFLESGYGTSNFASGRYGAYNYFGIGAFDNDPDYAMKFAKNKGWTSPAKAIMGGAS FVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFIRDKYK
Specific function: Endohydrolysis of the di-N-acetylchitobiosyl unit in high-mannose glycopeptides and glycoproteins containing the -[(Man)5(GlcNAc)2]-Asn structure. One N-acetyl-D-glucosamine residue remains attached to the protein; the rest of the oligosaccharide is relea
COG id: COG4193
COG function: function code G; Beta- N-acetylglucosaminidase
Gene ontology:
Cell location: Secreted. Note=Secreted, and then anchored on the cell surface at the peripheral cell wall above the completed septum (septal region), for the next cell division cycle [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the glycosyl hydrolase 73 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002502 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01510 Amidase_2; PF01832 Glucosaminidase [H]
EC number: =3.5.1.28; =3.2.1.96 [H]
Molecular weight: Translated: 70852; Mature: 70720
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS50911 CHAP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNFIFKRYWGFVTWGNAKD CCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCHH MANYRYPKGFRFYRYSSGFVPEPGDIAVWHPGNGIGSDGHTAIVVGPSNKSYFYSVDQNW HCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCC VNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTDTSSASKANDSTITGEAKKPQ CCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC FKEVKTVKYTAYSNVLDKEEHFIDHIVVMGDERSDIQGLYIKESMHMRSVDELYTQRNKF HHHHHEEEEEHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHCC ISDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIEVCGGQTDSKRQFLLNQIQALIRGV CCCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH WLLSGIDKNLSETTLKVDPNIWRSMKDLINYDLIKQGIPDNAKYEQVKKKMLETYIKRDI HHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LTRENIKEVTTKTTIRISDKTSVDSASTRGPTPSDEKPSIVTETSPFTFQQALDRQMSRG HHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCC NPKKSHTWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGISVSALNKILKGKGT CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCC LDGQGKAFAEACKKNNINEIYLIAHAFLESGYGTSNFASGRYGAYNYFGIGAFDNDPDYA CCCCCHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH MKFAKNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQ HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH ASTIAKLYKQIGLKGIYFIRDKYK HHHHHHHHHHHCCCEEEEEEECCC >Mature Secondary Structure GLPNPKTRKPTASEVVEWAKSNIGKRINIDNYRGSQCWDTPNFIFKRYWGFVTWGNAKD CCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCHH MANYRYPKGFRFYRYSSGFVPEPGDIAVWHPGNGIGSDGHTAIVVGPSNKSYFYSVDQNW HCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCC VNSNSWTGSPGSLVRHPYVSVTGFVRPPYSKDTSKPSSTDTSSASKANDSTITGEAKKPQ CCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC FKEVKTVKYTAYSNVLDKEEHFIDHIVVMGDERSDIQGLYIKESMHMRSVDELYTQRNKF HHHHHEEEEEHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHCC ISDYEIPHLYVDREATWLARPTNFDDPRHPNWLVIEVCGGQTDSKRQFLLNQIQALIRGV CCCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH WLLSGIDKNLSETTLKVDPNIWRSMKDLINYDLIKQGIPDNAKYEQVKKKMLETYIKRDI HHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LTRENIKEVTTKTTIRISDKTSVDSASTRGPTPSDEKPSIVTETSPFTFQQALDRQMSRG HHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCC NPKKSHTWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGISVSALNKILKGKGT CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCC LDGQGKAFAEACKKNNINEIYLIAHAFLESGYGTSNFASGRYGAYNYFGIGAFDNDPDYA CCCCCHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH MKFAKNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQ HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH ASTIAKLYKQIGLKGIYFIRDKYK HHHHHHHHHHHCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9220008 [H]