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The map label for this gene is yliC [C]

Identifier: 150392671

GI number: 150392671

Start: 228878

End: 230224

Strand: Direct

Name: yliC [C]

Synonym: SaurJH1_0197

Alternate gene names: 150392671

Gene position: 228878-230224 (Clockwise)

Preceding gene: 150392669

Following gene: 150392672

Centisome position: 7.87

GC content: 32.89

Gene sequence:

>1347_bases
GTGATTATCATAATTACTTATTTAGAATCTTTTAAGTCGTTGTATCACAAGGCATTTTACAAGTTTGTATTATCGGTATT
AAGCTTGCCAATATTTTTATATGCAGTGATAAAGTTTTTCTTTTCTGCTAAGAGAAAAAATTTTTACGCTAATAATTCTG
AAATTTCAGAAATTGAACGAGCGTTACATCAAAAATATAAATATTTATCGCAGCAAAAGTCATCCACACAAATACATAAA
GAAGCATTAAAAATATTCAAGGCACAAAGTTCTAATACGAGTTCAAAGAATATTGAACAAGCACATTTTTCAACATACTT
TGAAAATTTATTATTTCATAAGTTCATCATGATCAAAGTAATATTGGCCTTGCCGATGTTCATCTTATTGACTATTTATT
TACAGCCATTAGTTAGATATATTTTTGAGCGAATTGTCATGGCTGTGATTGTCATCATTGGTGTTATTGTCAGTGTGTTT
ACCATTCTGTATTTTTCACCGCTTGATGCGGCTTATAGCATACTGGGACAAAATGCAACAAAGGCACAGATACATCAATT
CAATGTATTACATCATCTTAACGAACCTTATTTTATTCAATTGTGGGATACCATCAAGGGTGTTTTTACCTTTGACTTAG
GTACGACTTACAAAGGGAATGAGGTTGTGACTAAAGCAGTTGGCGAAAGAATTCCAATTACAATAATTGTCGCAGTATTA
GCGCTAATTGTGGCATTAATTATTGCAATACCAATTGGTATTATCAGTGCGATGAAGCGAAATAGTTGGCTTGATATCAC
GTTAATGATAATTGCATTAATTGGTTTATCTATTCCAAGTTTCTGGCAAGGGCTATTATTCATTTTAGCGTTCTCATTGA
AATTGGATATTTTGCCACCATCTTATATGCCAGAACATCCAATATCGTTGATTTTACCTGTACTTGTCATTGGAACAAGT
ATTGCTGCTTCTATCACGCGTATGACAAGGTCTTCTGTACTTGAAGTAATGCGCAGCGATTATGTTTTAACTGCTTATGC
AAAAGGATTATCGACGACACAAGTTGTTATTAAACATATTTTGAAAAATGCCATTATTCCAATTGTAACGTTAGTTGGTC
TTCTAGTGGCAGAGTTACTAGGCGGTTCAGCAGTGACGGAACAAGTATTTAACATTAATGGTATCGGTCGTTATATCGTC
CAAAAACAACTAATACCTGATATCCCAGCAGTCATGGGTGGGGTCGTATATATATCAATTGTAATATCTTTAGCAAACTT
AATTATTGATATATTTTATGCTTTAATCGATCCAAAATTACGTAGTGAAATTAACGAAAGGAAGTGA

Upstream 100 bases:

>100_bases
TAAATTTGACATGATGTTGTGCCTCCCTATTCACAAATGTGTAAATTTATTCTATACTTTTGTATATCATAGTAATCTAC
TCAAGATTATTTTACAAGGA

Downstream 100 bases:

>100_bases
GGCATATGGTAAAACTTACAACAAAGATAGCTTCCTTAAAACTATTCGCAAGTTATGCTATAGCAACTTATATTTTAGTT
ATGTTAACGAGTGCATTAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIERALHQKYKYLSQQKSSTQIHK
EALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKVILALPMFILLTIYLQPLVRYIFERIVMAVIVIIGVIVSVF
TILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVL
ALIVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLVIGTS
IAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIV
QKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALIDPKLRSEINERK

Sequences:

>Translated_448_residues
MIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIERALHQKYKYLSQQKSSTQIHK
EALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKVILALPMFILLTIYLQPLVRYIFERIVMAVIVIIGVIVSVF
TILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVL
ALIVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLVIGTS
IAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIV
QKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALIDPKLRSEINERK
>Mature_448_residues
MIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIERALHQKYKYLSQQKSSTQIHK
EALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKVILALPMFILLTIYLQPLVRYIFERIVMAVIVIIGVIVSVF
TILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVL
ALIVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLVIGTS
IAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIV
QKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALIDPKLRSEINERK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=305, Percent_Identity=35.4098360655738, Blast_Score=181, Evalue=8e-47,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=32.2485207100592, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=33.7349397590361, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=28.9389067524116, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=28.5714285714286, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1787550, Length=314, Percent_Identity=27.7070063694268, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788504, Length=277, Percent_Identity=28.5198555956679, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 50391; Mature: 50391

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIER
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ALHQKYKYLSQQKSSTQIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILALPMFILLTIYLQPLVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVL
HHHHHHHHHHHHCCCCCEEEHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHH
ALIVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
SYMPEHPISLILPVLVIGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
LKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
VISLANLIIDIFYALIDPKLRSEINERK
HHHHHHHHHHHHHHHHCHHHHHHHHCCC
>Mature Secondary Structure
MIIIITYLESFKSLYHKAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIER
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ALHQKYKYLSQQKSSTQIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILALPMFILLTIYLQPLVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KAQIHQFNVLHHLNEPYFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVL
HHHHHHHHHHHHCCCCCEEEHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHH
ALIVALIIAIPIGIISAMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
SYMPEHPISLILPVLVIGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
LKNAIIPIVTLVGLLVAELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
VISLANLIIDIFYALIDPKLRSEINERK
HHHHHHHHHHHHHHHHCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]