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The map label for this gene is licD [H]

Identifier: 150008107

GI number: 150008107

Start: 1715896

End: 1716759

Strand: Reverse

Name: licD [H]

Synonym: BDI_1471

Alternate gene names: 150008107

Gene position: 1716759-1715896 (Counterclockwise)

Preceding gene: 150008108

Following gene: 150008103

Centisome position: 35.68

GC content: 37.04

Gene sequence:

>864_bases
ATGAGTGTTGTTGATTTCTCGAAATTATATCCTGACAATCGTCAAGAAGGAGAAACGGTATTGCGTCAAGCGCAATTAGT
GATGTTGAGGATGCTTAAGATTATTGATTATATATGTCGAAAGCATGATATTTCTTATTGGATGTGCTCGGGTACCTTAT
TAGGTGCGGTTCGTCATAAAGGTTTCATACCTTGGGACGATGATTTGGATATCTGTATGATTCGTGAGGATTATGAGCGT
TTTGTAGAGATTGCCGTGAATGAGTTCCCTGAAGATATGATGTTGCAGACCAGAGAGACTGATCCTCATTACCATTATTT
GCCTTTACCTTGTAAGGTTAGAGACAAGAAAAGCTTTATATTATCTCCGGGATATGAGGATGAAGAGTGCGAGAAGGGGT
TGTTTATAGATATATTTCCTATGGATCGTTATCATAAACAGAAATTGCCTTTTATGTTTGAAAAAATGGTGAAGGTCTAT
AATACGTTTATATGCAAGAGCTTGGATGCGATATATTTCAAGGATGAGTCTATAGATAAAAAGATATTGGCTTTTTTTCA
TCCCGTATTCCATAAACTGGTTCTTCAATATATGAAATTCGCAAAGAAGCTTATTGATAAGAATAGGGGATTAGGTACAG
ACTGCCGCCTTGGTCATGGTTTCGATACCTTGTGGAAAAGATATCTTCGATTTGACGATATCTTTCCTGTAGTAGAGATA
GACTTTGAGGATTCAAAGTTTTTTGCGCCTCATAGACCAGATGTATATTTAACGACATTATATGGTCCTAATTATATGAC
TCCACCTCCTGAGAAGCAGCGTTTGGCTGCGCAACATGCTCATGAAATAAAGCCAATTATATAA

Upstream 100 bases:

>100_bases
AACATTGGTGATACCTATATCTTACTTATTTGTAAGAAGACAATCGTCTCTTCTTATCCAAGAATATAAAAAGCAAAGTA
AAGATTCTAAGTAATATTTT

Downstream 100 bases:

>100_bases
AAATATCCCTCAAAATAGCTAAACAGTATTTTGAGGGATATTTTTTATATCTTGTCAAAGATTGTAGTTACTTTGTCGCT
GACATTCTGCCACGTATACT

Product: putative lipopolysaccharide biosynthsis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSVVDFSKLYPDNRQEGETVLRQAQLVMLRMLKIIDYICRKHDISYWMCSGTLLGAVRHKGFIPWDDDLDICMIREDYER
FVEIAVNEFPEDMMLQTRETDPHYHYLPLPCKVRDKKSFILSPGYEDEECEKGLFIDIFPMDRYHKQKLPFMFEKMVKVY
NTFICKSLDAIYFKDESIDKKILAFFHPVFHKLVLQYMKFAKKLIDKNRGLGTDCRLGHGFDTLWKRYLRFDDIFPVVEI
DFEDSKFFAPHRPDVYLTTLYGPNYMTPPPEKQRLAAQHAHEIKPII

Sequences:

>Translated_287_residues
MSVVDFSKLYPDNRQEGETVLRQAQLVMLRMLKIIDYICRKHDISYWMCSGTLLGAVRHKGFIPWDDDLDICMIREDYER
FVEIAVNEFPEDMMLQTRETDPHYHYLPLPCKVRDKKSFILSPGYEDEECEKGLFIDIFPMDRYHKQKLPFMFEKMVKVY
NTFICKSLDAIYFKDESIDKKILAFFHPVFHKLVLQYMKFAKKLIDKNRGLGTDCRLGHGFDTLWKRYLRFDDIFPVVEI
DFEDSKFFAPHRPDVYLTTLYGPNYMTPPPEKQRLAAQHAHEIKPII
>Mature_286_residues
SVVDFSKLYPDNRQEGETVLRQAQLVMLRMLKIIDYICRKHDISYWMCSGTLLGAVRHKGFIPWDDDLDICMIREDYERF
VEIAVNEFPEDMMLQTRETDPHYHYLPLPCKVRDKKSFILSPGYEDEECEKGLFIDIFPMDRYHKQKLPFMFEKMVKVYN
TFICKSLDAIYFKDESIDKKILAFFHPVFHKLVLQYMKFAKKLIDKNRGLGTDCRLGHGFDTLWKRYLRFDDIFPVVEID
FEDSKFFAPHRPDVYLTTLYGPNYMTPPPEKQRLAAQHAHEIKPII

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 34222; Mature: 34091

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVDFSKLYPDNRQEGETVLRQAQLVMLRMLKIIDYICRKHDISYWMCSGTLLGAVRHK
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHC
GFIPWDDDLDICMIREDYERFVEIAVNEFPEDMMLQTRETDPHYHYLPLPCKVRDKKSFI
CCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCEECCCCCEE
LSPGYEDEECEKGLFIDIFPMDRYHKQKLPFMFEKMVKVYNTFICKSLDAIYFKDESIDK
ECCCCCCHHHCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHH
KILAFFHPVFHKLVLQYMKFAKKLIDKNRGLGTDCRLGHGFDTLWKRYLRFDDIFPVVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
DFEDSKFFAPHRPDVYLTTLYGPNYMTPPPEKQRLAAQHAHEIKPII
ECCCCCEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVVDFSKLYPDNRQEGETVLRQAQLVMLRMLKIIDYICRKHDISYWMCSGTLLGAVRHK
CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHC
GFIPWDDDLDICMIREDYERFVEIAVNEFPEDMMLQTRETDPHYHYLPLPCKVRDKKSFI
CCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCEECCCCCEE
LSPGYEDEECEKGLFIDIFPMDRYHKQKLPFMFEKMVKVYNTFICKSLDAIYFKDESIDK
ECCCCCCHHHCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHH
KILAFFHPVFHKLVLQYMKFAKKLIDKNRGLGTDCRLGHGFDTLWKRYLRFDDIFPVVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
DFEDSKFFAPHRPDVYLTTLYGPNYMTPPPEKQRLAAQHAHEIKPII
ECCCCCEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]