Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 150006109

GI number: 150006109

Start: 4484007

End: 4484552

Strand: Direct

Name: rpoE [C]

Synonym: BVU_3620

Alternate gene names: 150006109

Gene position: 4484007-4484552 (Clockwise)

Preceding gene: 150006097

Following gene: 150006110

Centisome position: 86.85

GC content: 44.87

Gene sequence:

>546_bases
ATGAATGACACAGAACTAATAGAGGGATGTAAAGCCGGAAAGCGGGAAGCTTTGGAAACCATATACAGGCTCTTCTCCCG
CCAAATGTATGGAGTGTGCTATCGCTATGTAGGCGAAGATTCGGCACTGGACGTCATGCACGATGGATTCGTCAAAGTAT
TTTCCGCCATCGGCCAGCTACATGCCACCGACCTGCATGGATTCAGATCCTGGATCACCCGTATCATGGTAACCACCTCC
TTGCACCATCTCCGCAAACAGAAAAGCAGCTCTTTCCTTTCTGTAGATGACCTGGAAGAAAACATGCAACCTGTGGACGA
AGAAGATATGATTTCAATTCCTATTGAAACCCTGATGAAATTCATAGCTGAATTACCGACAGGCTATCGCACCATACTGA
ACTTGGCCGTATTCGAGGAAATGCCTCATAAGGAGATTGCGAAGACATTAGGCATTAACGAACATTCATCCTCCTCACAA
CTGTACCGCGCCAAATGTATACTTGCTCAGAAAATTAAAGAATACTTAACTCGACAATCATTATGA

Upstream 100 bases:

>100_bases
CAATTATCTTCTTTTTACATTTATTTTCAGAAAAACTTCTGTTTCCATGCAGTCTTTTACCCTCTCCTGTATCTTCATAT
AATAACATGACAAAAGAAGA

Downstream 100 bases:

>100_bases
AACAGGAAGAAGAACCGTGGATAGACCACTTGAAACAACGGGTTAACGAATACGAAAAGCCACTCCCAGAAAATGATTGG
AATCATTTTCAAACGGAATT

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma-70 Factor Family; Specialized Sigma Subunit Of RNA Polymerase; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor SigW; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNDTELIEGCKAGKREALETIYRLFSRQMYGVCYRYVGEDSALDVMHDGFVKVFSAIGQLHATDLHGFRSWITRIMVTTS
LHHLRKQKSSSFLSVDDLEENMQPVDEEDMISIPIETLMKFIAELPTGYRTILNLAVFEEMPHKEIAKTLGINEHSSSSQ
LYRAKCILAQKIKEYLTRQSL

Sequences:

>Translated_181_residues
MNDTELIEGCKAGKREALETIYRLFSRQMYGVCYRYVGEDSALDVMHDGFVKVFSAIGQLHATDLHGFRSWITRIMVTTS
LHHLRKQKSSSFLSVDDLEENMQPVDEEDMISIPIETLMKFIAELPTGYRTILNLAVFEEMPHKEIAKTLGINEHSSSSQ
LYRAKCILAQKIKEYLTRQSL
>Mature_181_residues
MNDTELIEGCKAGKREALETIYRLFSRQMYGVCYRYVGEDSALDVMHDGFVKVFSAIGQLHATDLHGFRSWITRIMVTTS
LHHLRKQKSSSFLSVDDLEENMQPVDEEDMISIPIETLMKFIAELPTGYRTILNLAVFEEMPHKEIAKTLGINEHSSSSQ
LYRAKCILAQKIKEYLTRQSL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20780; Mature: 20780

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTELIEGCKAGKREALETIYRLFSRQMYGVCYRYVGEDSALDVMHDGFVKVFSAIGQL
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
HATDLHGFRSWITRIMVTTSLHHLRKQKSSSFLSVDDLEENMQPVDEEDMISIPIETLMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCHHHHHH
FIAELPTGYRTILNLAVFEEMPHKEIAKTLGINEHSSSSQLYRAKCILAQKIKEYLTRQS
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure
MNDTELIEGCKAGKREALETIYRLFSRQMYGVCYRYVGEDSALDVMHDGFVKVFSAIGQL
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
HATDLHGFRSWITRIMVTTSLHHLRKQKSSSFLSVDDLEENMQPVDEEDMISIPIETLMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCHHHHHH
FIAELPTGYRTILNLAVFEEMPHKEIAKTLGINEHSSSSQLYRAKCILAQKIKEYLTRQS
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA