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The map label for this gene is ygaD [C]

Identifier: 150005785

GI number: 150005785

Start: 4110237

End: 4110737

Strand: Direct

Name: ygaD [C]

Synonym: BVU_3278

Alternate gene names: 150005785

Gene position: 4110237-4110737 (Clockwise)

Preceding gene: 150005784

Following gene: 150005786

Centisome position: 79.61

GC content: 43.71

Gene sequence:

>501_bases
ATGTCAGTAGAAGGTAAATTTTTAAGTAAAGAGATTAACGATTTGTTTTGGAGAGAGGGCCTGACACTCGTTACTGCCGA
GAGTTGCACGGCAGGAAGTGTGGCGGCCGCTATTACAGCCGTTGCCGGAAGTTCACAATTCTTTAAAGGTGGAATTATCG
CCTATTCCAACGAAATAAAGGAAAGTCTGTTAGGGGTAAACCACGAAACTTTAGAAACTCACGGAGCTGTAAGTGAAGAA
ACCGTTATCGAAATGGTAAAAGGAGCGATGAAATCGATGAATTCTGATTGTGCTGTAGCAACTTCAGGTATCGCAGGGCC
CACAGGAGGTACTCCCGACAAGCCGGTAGGTACCATTTGGATTGCTGCCGGATGTAAAGACAAAGTGATTACACTGAAAT
TGGAAGGCGACGAAGGAAGAAACAAAAACATTGCAAATGCAACCCAAAATGCACTGCAACTGCTTCGAAAGTTGTTCCAA
AACGAAGAAAATGAGCAGTAA

Upstream 100 bases:

>100_bases
AATTACCGGTTATTACAAGTATCTGGACAATGATTTTTGCACTATAGACAAGCCCGCTTATTCACGGGTAACTATTTAAT
ATTAAAAAACCGTTTTCAAC

Downstream 100 bases:

>100_bases
TTGCAGAATTATTTGCAAAAACTCTTGTTTTATACAAATAAAAGTGCTTATTTTGCACTCCGTTTGAAATAAGTATTGAA
AAAAACTATAAAAATAAGAT

Product: competence-damage inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSVEGKFLSKEINDLFWREGLTLVTAESCTAGSVAAAITAVAGSSQFFKGGIIAYSNEIKESLLGVNHETLETHGAVSEE
TVIEMVKGAMKSMNSDCAVATSGIAGPTGGTPDKPVGTIWIAAGCKDKVITLKLEGDEGRNKNIANATQNALQLLRKLFQ
NEENEQ

Sequences:

>Translated_166_residues
MSVEGKFLSKEINDLFWREGLTLVTAESCTAGSVAAAITAVAGSSQFFKGGIIAYSNEIKESLLGVNHETLETHGAVSEE
TVIEMVKGAMKSMNSDCAVATSGIAGPTGGTPDKPVGTIWIAAGCKDKVITLKLEGDEGRNKNIANATQNALQLLRKLFQ
NEENEQ
>Mature_165_residues
SVEGKFLSKEINDLFWREGLTLVTAESCTAGSVAAAITAVAGSSQFFKGGIIAYSNEIKESLLGVNHETLETHGAVSEET
VIEMVKGAMKSMNSDCAVATSGIAGPTGGTPDKPVGTIWIAAGCKDKVITLKLEGDEGRNKNIANATQNALQLLRKLFQN
EENEQ

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=158, Percent_Identity=47.4683544303797, Blast_Score=131, Evalue=2e-32,
Organism=Escherichia coli, GI1787818, Length=115, Percent_Identity=34.7826086956522, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17534; Mature: 17403

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEGKFLSKEINDLFWREGLTLVTAESCTAGSVAAAITAVAGSSQFFKGGIIAYSNEIK
CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCHHCCCEEEEHHHHH
ESLLGVNHETLETHGAVSEETVIEMVKGAMKSMNSDCAVATSGIAGPTGGTPDKPVGTIW
HHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEE
IAAGCKDKVITLKLEGDEGRNKNIANATQNALQLLRKLFQNEENEQ
EECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVEGKFLSKEINDLFWREGLTLVTAESCTAGSVAAAITAVAGSSQFFKGGIIAYSNEIK
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCHHCCCEEEEHHHHH
ESLLGVNHETLETHGAVSEETVIEMVKGAMKSMNSDCAVATSGIAGPTGGTPDKPVGTIW
HHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEE
IAAGCKDKVITLKLEGDEGRNKNIANATQNALQLLRKLFQNEENEQ
EECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA