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The map label for this gene is ymdB [C]

Identifier: 150005775

GI number: 150005775

Start: 4100681

End: 4101307

Strand: Direct

Name: ymdB [C]

Synonym: BVU_3268

Alternate gene names: 150005775

Gene position: 4100681-4101307 (Clockwise)

Preceding gene: 150005769

Following gene: 150005777

Centisome position: 79.42

GC content: 44.5

Gene sequence:

>627_bases
ATGAAAAGGGAAGAATATCAAAACAGGAGAATAATTGATTTATTTGCTGCCAAACTGCATAATTCCCCAATTTATTATAT
AGCTTTGTATAGAGGTTTTAATACAGAAAAACAGAAAGGAAAAATGAAGAAGATAAATGTTACCGTAGCCGATATCACTA
CTTTAAAAGTCGACGCCATTGTAAATGCAGCCAACTGTTCGTTGCTGGGTGGCGGTGGTGTAGATGGAGCTATCCATCGG
GCTGCAGGCCCGGCGTTGTTAGCGGAATGCAAAACATTGGGCGGTTGTCCGACGGGGGAAAGCAAGATAACCGATGCATA
CAACCTGCCATGCAGGAAAGTGATTCATACCGTAGGACCCGTATGGCATGGGGGAATGCATGGAGAAGCCGAAAAACTTG
CATCATGCTATCATACCAGTTTCATACTAGCGAAAGAGAACGGCATCCAAAGCATTGCATTCCCCTGTATCAGTACCGGC
GTATATCATTATCCCAAGGAAGAAGCGGCACGTATCGCATTGAATGCCATCGGGGAAGAAATGGCACATGGCTATGAAGG
AGAAGTGATTGTATGCTGTTTCTCGGAGGAAGATGCCGAAGTATATCGAAAGCTCTTGTCTTGCTGA

Upstream 100 bases:

>100_bases
CCAATAGTGTGCCATTACCGGCAAACAGGAGATAAGTAACTGATTTATATACAGATATAACAACAAGAAAAGAGAGAGAG
CAAAAGAAAATCTTTTCAAA

Downstream 100 bases:

>100_bases
GGAAAGTCACGGATCATTTCTATATCCGGAATGTATTGATTCCGTAGCCATCTTTGCTGAAACCATCTTGCAATAATGCT
GCCTATGGTCTTTCGTGAAG

Product: putative phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKREEYQNRRIIDLFAAKLHNSPIYYIALYRGFNTEKQKGKMKKINVTVADITTLKVDAIVNAANCSLLGGGGVDGAIHR
AAGPALLAECKTLGGCPTGESKITDAYNLPCRKVIHTVGPVWHGGMHGEAEKLASCYHTSFILAKENGIQSIAFPCISTG
VYHYPKEEAARIALNAIGEEMAHGYEGEVIVCCFSEEDAEVYRKLLSC

Sequences:

>Translated_208_residues
MKREEYQNRRIIDLFAAKLHNSPIYYIALYRGFNTEKQKGKMKKINVTVADITTLKVDAIVNAANCSLLGGGGVDGAIHR
AAGPALLAECKTLGGCPTGESKITDAYNLPCRKVIHTVGPVWHGGMHGEAEKLASCYHTSFILAKENGIQSIAFPCISTG
VYHYPKEEAARIALNAIGEEMAHGYEGEVIVCCFSEEDAEVYRKLLSC
>Mature_208_residues
MKREEYQNRRIIDLFAAKLHNSPIYYIALYRGFNTEKQKGKMKKINVTVADITTLKVDAIVNAANCSLLGGGGVDGAIHR
AAGPALLAECKTLGGCPTGESKITDAYNLPCRKVIHTVGPVWHGGMHGEAEKLASCYHTSFILAKENGIQSIAFPCISTG
VYHYPKEEAARIALNAIGEEMAHGYEGEVIVCCFSEEDAEVYRKLLSC

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=56.0693641618497, Blast_Score=187, Evalue=5e-48,
Organism=Homo sapiens, GI13569840, Length=174, Percent_Identity=51.7241379310345, Blast_Score=170, Evalue=7e-43,
Organism=Homo sapiens, GI207450721, Length=165, Percent_Identity=37.5757575757576, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI8923143, Length=165, Percent_Identity=37.5757575757576, Blast_Score=100, Evalue=7e-22,
Organism=Homo sapiens, GI226371718, Length=130, Percent_Identity=35.3846153846154, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI154813199, Length=168, Percent_Identity=34.5238095238095, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI226371710, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI226371706, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI226371716, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI226371714, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI226371712, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI20336746, Length=162, Percent_Identity=29.0123456790123, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=51.4792899408284, Blast_Score=167, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI17538214, Length=197, Percent_Identity=44.6700507614213, Blast_Score=142, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24586353, Length=149, Percent_Identity=36.241610738255, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 22652; Mature: 22652

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREEYQNRRIIDLFAAKLHNSPIYYIALYRGFNTEKQKGKMKKINVTVADITTLKVDAI
CCCCHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCEEEEEEEEEEEEEEEEEHE
VNAANCSLLGGGGVDGAIHRAAGPALLAECKTLGGCPTGESKITDAYNLPCRKVIHTVGP
EECCCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
VWHGGMHGEAEKLASCYHTSFILAKENGIQSIAFPCISTGVYHYPKEEAARIALNAIGEE
HHCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MAHGYEGEVIVCCFSEEDAEVYRKLLSC
HHCCCCCCEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKREEYQNRRIIDLFAAKLHNSPIYYIALYRGFNTEKQKGKMKKINVTVADITTLKVDAI
CCCCHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCEEEEEEEEEEEEEEEEEHE
VNAANCSLLGGGGVDGAIHRAAGPALLAECKTLGGCPTGESKITDAYNLPCRKVIHTVGP
EECCCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
VWHGGMHGEAEKLASCYHTSFILAKENGIQSIAFPCISTGVYHYPKEEAARIALNAIGEE
HHCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MAHGYEGEVIVCCFSEEDAEVYRKLLSC
HHCCCCCCEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]