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The map label for this gene is xerC [H]

Identifier: 150005370

GI number: 150005370

Start: 3621187

End: 3622293

Strand: Reverse

Name: xerC [H]

Synonym: BVU_2846

Alternate gene names: 150005370

Gene position: 3622293-3621187 (Counterclockwise)

Preceding gene: 150005371

Following gene: 150005369

Centisome position: 70.16

GC content: 38.93

Gene sequence:

>1107_bases
ATGAATAGTGACAGACAGAAGATATTAACTGATTATATTTCCTACTTATATACAACAAGAAGGACTTATGATACCATCGG
TAAATATATCAAATATGTAACGGATTTTCTTGAAAGTGCCGAAGATGTCAATCGTCGTAGCTATCTGGCTTATAAGCGTG
AAAATGCCAATATTGGGGCACGTTATCCATTGATGAGTGAAGCCATTTGTGATTTATTACATCACCTTAAAATCGGATAT
AACCGCCGAGAGCAGAAAATAAAGACGTTAGAAAGACTTGATGCCATTTCGGAGAAGAATAGAAAACTGTTGAATGATTT
TATAGTGTGGTTGACCGACAACAATGATTATTCGCCACATACAGTGGATATTTATTATACATCCTTGAAGCAATACTTTG
AATATGTGAATGAGATCAATATGGAAAACTGCAAGCGGTTTATACGGACTTTAGAAGAAAAATCATTATCCCCACAGACT
ATCCGTCTACGTATCACCGCTTTGGAAAAATTTTCTAAATGGCTAAAAAAACCGATAGAGCTTAAGCGACCTAAGATGAA
GCGCAAGCTCGATGTAAACAATGTCCCGACAGAAGAGGAGTACAACCGCCTACTGGATTTTCTGAAAACGAAATCCAACA
AGGATTACTACTTTTTTATCAAAGTATTGGGTACAACGGGTGCCCGTCTGTCAGAATTCCAGCAGTTCACGTGGGAAGAC
ATTATATCCGGGGAGGTAACACTAAGAGGGAAGGGTAACAAGTACCGTCGATTTTTCTTTCAAAAACAGCTACAGCAAGA
AGCGAAGGCTTATGCTAAGGAACATGGTAAAACCGGGATTTTTGCGGTAGGGAGATTCGGTCCGATCACACAGCGGGGCT
TTTCCCAGCACTTGAAAGCATGGGGAAAACATTGCGGTATTGATTCAAGGAAGATGCACGCACACGCCTTTCGTCATTTT
TTCGCTAAAATGTTCCTGAAAAAAAACAAAGATGTTATTCAACTGGCTGACCTTTTAGGTCATGGGAGTGTAGACACAAC
AAGAATTTATTTACAAAAGAGTTATGACGAGCAAAAAAGAGATTTTAATCGAAACGTTACATGGTAG

Upstream 100 bases:

>100_bases
AATATCTGTGTCGTTTTTTCGATCATTATGTTTGTGTCCTGAAAAAGACTGTAGAGAATAAAGGAATAGTGTATTACTCA
TAACAAATCAATAAATAACC

Downstream 100 bases:

>100_bases
CCTTGAACCATTTAAGCAGCTTCCGACCCTGATTGACAAGGAAACCATTTATGACGAGACTGGACATGTAGACACCGAGT
TTCTGACAGCCATACTGGAG

Product: putative phage integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MNSDRQKILTDYISYLYTTRRTYDTIGKYIKYVTDFLESAEDVNRRSYLAYKRENANIGARYPLMSEAICDLLHHLKIGY
NRREQKIKTLERLDAISEKNRKLLNDFIVWLTDNNDYSPHTVDIYYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQT
IRLRITALEKFSKWLKKPIELKRPKMKRKLDVNNVPTEEEYNRLLDFLKTKSNKDYYFFIKVLGTTGARLSEFQQFTWED
IISGEVTLRGKGNKYRRFFFQKQLQQEAKAYAKEHGKTGIFAVGRFGPITQRGFSQHLKAWGKHCGIDSRKMHAHAFRHF
FAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNRNVTW

Sequences:

>Translated_368_residues
MNSDRQKILTDYISYLYTTRRTYDTIGKYIKYVTDFLESAEDVNRRSYLAYKRENANIGARYPLMSEAICDLLHHLKIGY
NRREQKIKTLERLDAISEKNRKLLNDFIVWLTDNNDYSPHTVDIYYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQT
IRLRITALEKFSKWLKKPIELKRPKMKRKLDVNNVPTEEEYNRLLDFLKTKSNKDYYFFIKVLGTTGARLSEFQQFTWED
IISGEVTLRGKGNKYRRFFFQKQLQQEAKAYAKEHGKTGIFAVGRFGPITQRGFSQHLKAWGKHCGIDSRKMHAHAFRHF
FAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNRNVTW
>Mature_368_residues
MNSDRQKILTDYISYLYTTRRTYDTIGKYIKYVTDFLESAEDVNRRSYLAYKRENANIGARYPLMSEAICDLLHHLKIGY
NRREQKIKTLERLDAISEKNRKLLNDFIVWLTDNNDYSPHTVDIYYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQT
IRLRITALEKFSKWLKKPIELKRPKMKRKLDVNNVPTEEEYNRLLDFLKTKSNKDYYFFIKVLGTTGARLSEFQQFTWED
IISGEVTLRGKGNKYRRFFFQKQLQQEAKAYAKEHGKTGIFAVGRFGPITQRGFSQHLKAWGKHCGIDSRKMHAHAFRHF
FAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNRNVTW

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=273, Percent_Identity=26.7399267399267, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789261, Length=143, Percent_Identity=32.8671328671329, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43921; Mature: 43921

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDRQKILTDYISYLYTTRRTYDTIGKYIKYVTDFLESAEDVNRRSYLAYKRENANIGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCCCCC
RYPLMSEAICDLLHHLKIGYNRREQKIKTLERLDAISEKNRKLLNDFIVWLTDNNDYSPH
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
TVDIYYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQTIRLRITALEKFSKWLKKPIE
EEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCHH
LKRPKMKRKLDVNNVPTEEEYNRLLDFLKTKSNKDYYFFIKVLGTTGARLSEFQQFTWED
HCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
IISGEVTLRGKGNKYRRFFFQKQLQQEAKAYAKEHGKTGIFAVGRFGPITQRGFSQHLKA
HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
WGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKR
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH
DFNRNVTW
HCCCCCCC
>Mature Secondary Structure
MNSDRQKILTDYISYLYTTRRTYDTIGKYIKYVTDFLESAEDVNRRSYLAYKRENANIGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCCCCC
RYPLMSEAICDLLHHLKIGYNRREQKIKTLERLDAISEKNRKLLNDFIVWLTDNNDYSPH
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
TVDIYYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQTIRLRITALEKFSKWLKKPIE
EEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCHH
LKRPKMKRKLDVNNVPTEEEYNRLLDFLKTKSNKDYYFFIKVLGTTGARLSEFQQFTWED
HCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
IISGEVTLRGKGNKYRRFFFQKQLQQEAKAYAKEHGKTGIFAVGRFGPITQRGFSQHLKA
HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
WGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKR
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHH
DFNRNVTW
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA