Click here to switch to the map view.

The map label for this gene is 150005348

Identifier: 150005348

GI number: 150005348

Start: 3599578

End: 3600063

Strand: Reverse

Name: 150005348

Synonym: BVU_2824

Alternate gene names: NA

Gene position: 3600063-3599578 (Counterclockwise)

Preceding gene: 150005349

Following gene: 150005347

Centisome position: 69.73

GC content: 41.36

Gene sequence:

>486_bases
ATGACTGATTTCAATCGTGAGATAGCAGATTTGTATCCATGGCTTTTCAAAATAGCAAGAAGATACTGTTCATCCGTATG
CGATATCGAGGATCTTGTCGGTGACACCATCTATAAGGTTTTAAGCAATAAAGAAAAATTCAAGGAGGGCAGGGCTCTGA
AACCCTGGTGTGAGGTTATCATGCTGAACACCTATATCACTGCCTATAATCGAAGATCACTAATCCGATTTGTGGGGTGT
GACAACATTAAAGAGATATTCTCCCATAATCAAGCCTCTGATGACTTGATGGTACATGACATTCAGGCTGCAATAAGGAG
ATGCCATAACAGAACCTGCTGTATGGACTGTGTGGTTTACTACGCACACGGATATTCATACAAAGAAATAGGCAAAATGG
TCGGAATACCAGTAAATACCGTAAGAAGCCGTATCTCTTACGGTCGGGAACTGCTGAGGAACGAACTGGATTTAACCGTT
AAATAG

Upstream 100 bases:

>100_bases
CCGCAAGTGAATTATTAAAACAGGCGCAGATGTATCATCTTGAGCTTGAAAAGAATCTGAGTGAGGAATTATCATTATTC
ACCCTTAAAATTGTGAAAAA

Downstream 100 bases:

>100_bases
AGTTCGTACATTTTAAATGGAAGAGTTCCTGTTTGTAAAACTTGTTTATTATGATTATCTTTATAGTACAATAAAAAACA
ACAAGTCAAACCAAAAACAG

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: ECF Family Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTDFNREIADLYPWLFKIARRYCSSVCDIEDLVGDTIYKVLSNKEKFKEGRALKPWCEVIMLNTYITAYNRRSLIRFVGC
DNIKEIFSHNQASDDLMVHDIQAAIRRCHNRTCCMDCVVYYAHGYSYKEIGKMVGIPVNTVRSRISYGRELLRNELDLTV
K

Sequences:

>Translated_161_residues
MTDFNREIADLYPWLFKIARRYCSSVCDIEDLVGDTIYKVLSNKEKFKEGRALKPWCEVIMLNTYITAYNRRSLIRFVGC
DNIKEIFSHNQASDDLMVHDIQAAIRRCHNRTCCMDCVVYYAHGYSYKEIGKMVGIPVNTVRSRISYGRELLRNELDLTV
K
>Mature_160_residues
TDFNREIADLYPWLFKIARRYCSSVCDIEDLVGDTIYKVLSNKEKFKEGRALKPWCEVIMLNTYITAYNRRSLIRFVGCD
NIKEIFSHNQASDDLMVHDIQAAIRRCHNRTCCMDCVVYYAHGYSYKEIGKMVGIPVNTVRSRISYGRELLRNELDLTVK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18850; Mature: 18719

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFNREIADLYPWLFKIARRYCSSVCDIEDLVGDTIYKVLSNKEKFKEGRALKPWCEVI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH
MLNTYITAYNRRSLIRFVGCDNIKEIFSHNQASDDLMVHDIQAAIRRCHNRTCCMDCVVY
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
YAHGYSYKEIGKMVGIPVNTVRSRISYGRELLRNELDLTVK
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDFNREIADLYPWLFKIARRYCSSVCDIEDLVGDTIYKVLSNKEKFKEGRALKPWCEVI
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH
MLNTYITAYNRRSLIRFVGCDNIKEIFSHNQASDDLMVHDIQAAIRRCHNRTCCMDCVVY
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
YAHGYSYKEIGKMVGIPVNTVRSRISYGRELLRNELDLTVK
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA