Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 150005337

GI number: 150005337

Start: 3587323

End: 3588546

Strand: Reverse

Name: xerC [H]

Synonym: BVU_2813

Alternate gene names: 150005337

Gene position: 3588546-3587323 (Counterclockwise)

Preceding gene: 150005340

Following gene: 150005336

Centisome position: 69.5

GC content: 46.81

Gene sequence:

>1224_bases
ATGCTAGAGAAGATACGATACAGGTTGGTCTTTAACCGCCAAAAGAAACTGAATAAGCAAGGCACGGCCCTTGTACAGGT
TGAAGCCTATTTGAACCAAAGGAAAATCTACCTGAAGACCAATGTTTACCTCAAACCGGAGTGCTGGAGCCGTGAGGGGG
CACAAGTCATTAACCACCCCCAATCTAACGAACTCAACGCAATGCTCTATGAATACATCCTGTATCTGCAAGGCATAGAG
TTGGGGTATTGGAAGCGCGGAATACCTGCCACACTCTCACTACTGAAGGATGCTGTCAAGAAGAAAAGTGCCGTGAATGT
CAGCTTCTCCACTTTCGCCAAATCAGCCATTGACAATTCGGACAAGAAGCAGTCCACCAAGGACAACCTGCACTCGACAC
TGGCGGTCCTGAATGACTTCCGTTCCGGATTGGACTTCAAGGATCTTACCTATACATTCCTTCGTGATTTTGAGCAATAT
TTAAGGGAAAAGGGCAATGCGGTCAATACGATAGCCAAGCACATGAGACAGCTCCGTACCTTGGTCAATGAGGCAATCAA
CCAGGGATATATGCACGCGGACGCTTATCCGTTCAGAAAGTACAAAATCAAACAGGAGAAAGGCAGACATGAGTTTCTTA
CCCCGGACGAGCTGAAGAAGCTGGAAACGGTCGAAGTGGAAGAGAAGTCCATGCGCCATGTGCTCGATGCCTTCCTGTTC
TGCTGTTATACCGGATTGCGCTATTCTGACTTCTGCCAGCTCACACCTGAGAATTTCATTAGAGTAAACGGCAAACGGTG
GCTGTACTTCAAATCCGTCAAGACAGGGGTGGAAATCCGTCTGCCGTTACATCTGCTGTTTGAAAGCAGGGCATTGGGCA
TTCTTGACCGTTATCCGGATATAGGTAGTCTTGTATCCCTACCCTGTAACTCGGAAGTGAATAAGCAGCTTCGAAAGCTG
ACCGGATTGTGTGGTATCAAAAAACGGATAACCTACCATGTGAGCCGTCATACCTGTGCCACCCTGCTGGTTCATCAGGG
AGTTGCGATTACAACAGTCCAGAAGCTGCTCGGACATACTTCCGTAAAGACCACACAGATTTATTCGGAGGTACTTTCCA
GCACCATTGTGCGTGACTTGAAAAATGTTCAAAGGAAAAGGAAAAAAGTAAAGATGTTTCCTGATAAAGGCTTGAGAACA
TCTGATTTTATAGACAACCGGTAG

Upstream 100 bases:

>100_bases
AGCTTCAAACTGTTCATTAGTTCTCCCAGGTCAAGATTATAAGATTAATATTGTCGAATTTGATTATTTTGGAGGAAATA
GCTAAATTTAAAATAAAAAT

Downstream 100 bases:

>100_bases
ATTTCATGTTTCCTATTTGTTTTCTATTAATATTGTGACTCTTTAATTTCTTCGGATAATCGAAATATTGCTCCTGATTA
TTTTTTTCAATATGGATTGA

Product: integrase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLEKIRYRLVFNRQKKLNKQGTALVQVEAYLNQRKIYLKTNVYLKPECWSREGAQVINHPQSNELNAMLYEYILYLQGIE
LGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQY
LREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEKSMRHVLDAFLF
CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSLVSLPCNSEVNKQLRKL
TGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKMFPDKGLRT
SDFIDNR

Sequences:

>Translated_407_residues
MLEKIRYRLVFNRQKKLNKQGTALVQVEAYLNQRKIYLKTNVYLKPECWSREGAQVINHPQSNELNAMLYEYILYLQGIE
LGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQY
LREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEKSMRHVLDAFLF
CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSLVSLPCNSEVNKQLRKL
TGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKMFPDKGLRT
SDFIDNR
>Mature_407_residues
MLEKIRYRLVFNRQKKLNKQGTALVQVEAYLNQRKIYLKTNVYLKPECWSREGAQVINHPQSNELNAMLYEYILYLQGIE
LGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQY
LREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEKSMRHVLDAFLF
CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSLVSLPCNSEVNKQLRKL
TGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKMFPDKGLRT
SDFIDNR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47262; Mature: 47262

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKIRYRLVFNRQKKLNKQGTALVQVEAYLNQRKIYLKTNVYLKPECWSREGAQVINHP
CCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCEEEEEECEEECCCCCCCCCHHHHCCC
QSNELNAMLYEYILYLQGIELGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNS
CCCCHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
DKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRT
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEKSMRHVLDAFLF
HHHHHHHCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPD
HHHHCCCHHHHHCCCCCCEEEECCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCC
IGSLVSLPCNSEVNKQLRKLTGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHT
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
SVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKMFPDKGLRTSDFIDNR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLEKIRYRLVFNRQKKLNKQGTALVQVEAYLNQRKIYLKTNVYLKPECWSREGAQVINHP
CCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCEEEEEECEEECCCCCCCCCHHHHCCC
QSNELNAMLYEYILYLQGIELGYWKRGIPATLSLLKDAVKKKSAVNVSFSTFAKSAIDNS
CCCCHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
DKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRT
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEKSMRHVLDAFLF
HHHHHHHCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPD
HHHHCCCHHHHHCCCCCCEEEECCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCC
IGSLVSLPCNSEVNKQLRKLTGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHT
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
SVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKMFPDKGLRTSDFIDNR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA