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The map label for this gene is smpA [H]

Identifier: 148828023

GI number: 148828023

Start: 1417945

End: 1418358

Strand: Reverse

Name: smpA [H]

Synonym: CGSHiGG_07700

Alternate gene names: 148828023

Gene position: 1418358-1417945 (Counterclockwise)

Preceding gene: 148828024

Following gene: 148828022

Centisome position: 75.16

GC content: 40.82

Gene sequence:

>414_bases
ATGCAAGTTAAAACACTTTTAGGCGCAACCTTTTTAGCATTAAGCCTCGCTTCTTGTTCCACCGTTGAAAAAGTTGTATA
TCGAATTGATGTACCGCAAGGCAACTATTTAGAGGCGACTACCGTTGCGCAAGTTAAAGAAGGCATGACCGCCCAACAAG
TACAATATTTGTTGGGAACGCCAGTATTAGTCGATCCTTATAATAGTCAGACTTGGTACTATGTGTTCTTACAACAACGT
GCCTATGAAACGCCAGTTCAACATACGCTAACCGTAAAATTCGATCCGCACGGTATCGTGACAGAAACCCATCTTGATAA
ACCTTTACCACAGGTTTCACAACAAGGCGAAAATAACACCATTATTGAAACAGGTGAGAAACCAAAATCAAGCTGGTGGA
AATTCTGGAAATAA

Upstream 100 bases:

>100_bases
ATCAATTACAAAAGGCTTTAAAATCAGAGAATTAATTTGGAAATACACCCAATTTTGGATATTATTTGACAGAACTTTTG
CACAAATTAAGGTAAAGAAA

Downstream 100 bases:

>100_bases
TCTTTTTATTTTCACCGCACTACAATAAGAATAATTGGTAAAAGGAATCTCCAATGTCAAAACTCTTACTCGTTGATGAT
GATATTGAATTAACTGAACT

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MQVKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQR
AYETPVQHTLTVKFDPHGIVTETHLDKPLPQVSQQGENNTIIETGEKPKSSWWKFWK

Sequences:

>Translated_137_residues
MQVKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQR
AYETPVQHTLTVKFDPHGIVTETHLDKPLPQVSQQGENNTIIETGEKPKSSWWKFWK
>Mature_137_residues
MQVKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGTPVLVDPYNSQTWYYVFLQQR
AYETPVQHTLTVKFDPHGIVTETHLDKPLPQVSQQGENNTIIETGEKPKSSWWKFWK

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=109, Percent_Identity=49.5412844036697, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 15563; Mature: 15563

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGT
CCCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCEECHHHHHHHHCCCCHHHHHHHHCC
PVLVDPYNSQTWYYVFLQQRAYETPVQHTLTVKFDPHGIVTETHLDKPLPQVSQQGENNT
CEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEECCCCCCCCCHHHHCCCCCC
IIETGEKPKSSWWKFWK
EEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQVKTLLGATFLALSLASCSTVEKVVYRIDVPQGNYLEATTVAQVKEGMTAQQVQYLLGT
CCCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCEECHHHHHHHHCCCCHHHHHHHHCC
PVLVDPYNSQTWYYVFLQQRAYETPVQHTLTVKFDPHGIVTETHLDKPLPQVSQQGENNT
CEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEECCCCCCCCCHHHHCCCCCC
IIETGEKPKSSWWKFWK
EEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]