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The map label for this gene is lppB [H]

Identifier: 148827876

GI number: 148827876

Start: 1244567

End: 1245784

Strand: Direct

Name: lppB [H]

Synonym: CGSHiGG_06820

Alternate gene names: 148827876

Gene position: 1244567-1245784 (Clockwise)

Preceding gene: 148827875

Following gene: 148827877

Centisome position: 65.95

GC content: 40.48

Gene sequence:

>1218_bases
ATGAAAAAATCGTTTCTCTTACTCCCTTTGAGTCTTGTTGTATTATCGGCTTGTACCTCTAATTCTCCTGCACCTATTTC
TGATGCAGATGGAAATCTTTCCCCTAGTGTAATACAATCTGTAAATGGCAGTAATGTAGGTGGTGCTTGGCAACCTGAAA
TTCAAAAAAATTCATTACCTACAATGGGAAATATGGTCACGCCACAACCAAATTTTCAACCGATTAATCAACAACCAACA
ATGCCAACAGCACCTGCACAACCTGCATTTCAACCCTCTCCGAAAACCGTAGTTAGCGCACCGACAGTACAAACAAAAAC
AGTTACCAAAACAGTCGCTGATTGTGTAGATGGACAGCATATTAATATCCCACGTAATCCAAATACCAATGCGCCAGATT
ACAGCAAAATCTCAAAAGGCTCTTACAAAGGCAATACCTATAAAGTAAACAAAGGCGATACAATGTTCTTAATCGCTTAC
TTGGCGGGGATTGATGTAAAAGAATTGGCGGCGTTGAATAACCTGTCCGAACCTTATAATTTAAGTTTAGGGCAAGTTTT
AAAGATTTCTAATTGTGACATAAAAACGGTTACTACAACGGTTTCTGTAAAACAACCTGCAGTCACAGCATCAACAGCAA
CGCCAGTTAAACCAGCAGTCACTTATACTCCGGGCGCAAACGGTACTCAAATAGGATCTGACGGTACTATTATTGGCCCA
ATTAAATCAGAGGCTGGCACATCGCCTAGTGTACCTGTGGCAACTTCATCAACACAGGTTACATCATCTGTAAATAATGC
GAATAGCACACCAATTAATTCCAATGTTGTTGCGCCAATCGCCTCAAATGTTGTGTGGCAATGGCCGACTTCAGGTAATA
TTATTCAAGGTTTCTCAAGCACAGATGGCGGTAATAAAGGAATTGATATTAGTGGTTCACGAGGACAAGCTGTAAAAGCG
GCTGCAGCAGGGCGAATAGTGTATGCAGGCAATGCTTTACGTGGTTACGGTAATTTAATTATCATCAAACATAATGATGA
TTTTTTAAGTGCCTATGCGCATAACGACAAAATTCTTGTCGCCGATCAACAAGAAGTCAAAGCAGGTCAAGACATCGCAA
AAATGGGTAGCTCTGGTACAAATACCGTGAAACTCCACTTTGAAATTCGCTATAAAGGTAAATCAGTGGATCCAGTACGT
TACCTACCAAGACATTAA

Upstream 100 bases:

>100_bases
AAGGCACAGGTGCCGTTGCTGGCGGTAGTTTTATGCCAGAAATTCAAAAAAATACGATACCAACACAAATGAAATAATAA
AGGAACAATAAGGAATAACT

Downstream 100 bases:

>100_bases
TCTTCCTGTAAAAAGTTCGGTAAAAAATCTCAACAAATTTTTACCGCACTTTTTTATTAAAAATATTCTGTGAGGAATAT
CACAAAATAAAAAAATAATA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKKSFLLLPLSLVVLSACTSNSPAPISDADGNLSPSVIQSVNGSNVGGAWQPEIQKNSLPTMGNMVTPQPNFQPINQQPT
MPTAPAQPAFQPSPKTVVSAPTVQTKTVTKTVADCVDGQHINIPRNPNTNAPDYSKISKGSYKGNTYKVNKGDTMFLIAY
LAGIDVKELAALNNLSEPYNLSLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGP
IKSEAGTSPSVPVATSSTQVTSSVNNANSTPINSNVVAPIASNVVWQWPTSGNIIQGFSSTDGGNKGIDISGSRGQAVKA
AAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKILVADQQEVKAGQDIAKMGSSGTNTVKLHFEIRYKGKSVDPVR
YLPRH

Sequences:

>Translated_405_residues
MKKSFLLLPLSLVVLSACTSNSPAPISDADGNLSPSVIQSVNGSNVGGAWQPEIQKNSLPTMGNMVTPQPNFQPINQQPT
MPTAPAQPAFQPSPKTVVSAPTVQTKTVTKTVADCVDGQHINIPRNPNTNAPDYSKISKGSYKGNTYKVNKGDTMFLIAY
LAGIDVKELAALNNLSEPYNLSLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGP
IKSEAGTSPSVPVATSSTQVTSSVNNANSTPINSNVVAPIASNVVWQWPTSGNIIQGFSSTDGGNKGIDISGSRGQAVKA
AAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKILVADQQEVKAGQDIAKMGSSGTNTVKLHFEIRYKGKSVDPVR
YLPRH
>Mature_405_residues
MKKSFLLLPLSLVVLSACTSNSPAPISDADGNLSPSVIQSVNGSNVGGAWQPEIQKNSLPTMGNMVTPQPNFQPINQQPT
MPTAPAQPAFQPSPKTVVSAPTVQTKTVTKTVADCVDGQHINIPRNPNTNAPDYSKISKGSYKGNTYKVNKGDTMFLIAY
LAGIDVKELAALNNLSEPYNLSLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGP
IKSEAGTSPSVPVATSSTQVTSSVNNANSTPINSNVVAPIASNVVWQWPTSGNIIQGFSSTDGGNKGIDISGSRGQAVKA
AAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKILVADQQEVKAGQDIAKMGSSGTNTVKLHFEIRYKGKSVDPVR
YLPRH

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=283, Percent_Identity=46.643109540636, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI87082174, Length=264, Percent_Identity=39.7727272727273, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=38.0165289256198, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 42410; Mature: 42410

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSFLLLPLSLVVLSACTSNSPAPISDADGNLSPSVIQSVNGSNVGGAWQPEIQKNSLP
CCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
TMGNMVTPQPNFQPINQQPTMPTAPAQPAFQPSPKTVVSAPTVQTKTVTKTVADCVDGQH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCE
INIPRNPNTNAPDYSKISKGSYKGNTYKVNKGDTMFLIAYLAGIDVKELAALNNLSEPYN
EECCCCCCCCCCCHHHHCCCCCCCCEEEECCCCEEEEEEEHHCCCHHHHHHHHCCCCCCC
LSLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGP
CCCCCEEEECCCCEEEEEEEEEECCCCEECCCCCCCCCCEEECCCCCCCEECCCCCEEEC
IKSEAGTSPSVPVATSSTQVTSSVNNANSTPINSNVVAPIASNVVWQWPTSGNIIQGFSS
CCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCC
TDGGNKGIDISGSRGQAVKAAAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKILV
CCCCCCCEEECCCCCCEEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEE
ADQQEVKAGQDIAKMGSSGTNTVKLHFEIRYKGKSVDPVRYLPRH
ECHHHHHCCHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MKKSFLLLPLSLVVLSACTSNSPAPISDADGNLSPSVIQSVNGSNVGGAWQPEIQKNSLP
CCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
TMGNMVTPQPNFQPINQQPTMPTAPAQPAFQPSPKTVVSAPTVQTKTVTKTVADCVDGQH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCE
INIPRNPNTNAPDYSKISKGSYKGNTYKVNKGDTMFLIAYLAGIDVKELAALNNLSEPYN
EECCCCCCCCCCCHHHHCCCCCCCCEEEECCCCEEEEEEEHHCCCHHHHHHHHCCCCCCC
LSLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGP
CCCCCEEEECCCCEEEEEEEEEECCCCEECCCCCCCCCCEEECCCCCCCEECCCCCEEEC
IKSEAGTSPSVPVATSSTQVTSSVNNANSTPINSNVVAPIASNVVWQWPTSGNIIQGFSS
CCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCC
TDGGNKGIDISGSRGQAVKAAAAGRIVYAGNALRGYGNLIIIKHNDDFLSAYAHNDKILV
CCCCCCCEEECCCCCCEEEHHHCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEE
ADQQEVKAGQDIAKMGSSGTNTVKLHFEIRYKGKSVDPVRYLPRH
ECHHHHHCCHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]