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The map label for this gene is rraB [H]

Identifier: 148827872

GI number: 148827872

Start: 1241454

End: 1241876

Strand: Reverse

Name: rraB [H]

Synonym: CGSHiGG_06790

Alternate gene names: 148827872

Gene position: 1241876-1241454 (Counterclockwise)

Preceding gene: 148827880

Following gene: 148827871

Centisome position: 65.81

GC content: 35.93

Gene sequence:

>423_bases
ATGTCAAAATTGGCTGAATTACAAGCAGAAACCCGTGAAATTATCGAAGATTTACTTAATGATGGCAGTGATCCAAATGC
GCTTTATATTATTGAACATCACATCGCACACCACGATTTTGATTTGTTAGAAAAAATTGCGGTTGATGCGTTTAAAGCGG
GCTATGAAGTTTCCGAAGCGGAAGAATTTAAAGATGATGACGGTAAACCAATTTTCTGTTTTGACATCATCAGTGAAGTA
GAATTAAAAGCTGAAATTATTGATGCTCAACAAAAAGAAATCCTTCCGTTATTAGAAAAACATAATGGTATTTACGACGG
TTGGGGAACTTATTTTGAAGACCCAAATGCCGATGAAGATGAATACGGTGACGATGGGGAATTTTTTGATGATGAAGATG
AAGAAGAACCTCGTGTCCATTAA

Upstream 100 bases:

>100_bases
GTTCTTTTTTATCGAAAATAATTGTGCGAAATTCTATGCGACTTTTCGTGATTTATCCACTAAAATAACCGCACTTTTGT
TCTTGTTGAAGGATTTTATT

Downstream 100 bases:

>100_bases
TCCGTAAAGTCTTGCGTGCGGAATAATTTTCGCTACAATGGTACAACTTTTTTAACGGATTTTTTATAAGGAAAACATAA
TGAAAGTAGAAAAAAATGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADEDEYGDDGEFFDDEDEEEPRVH

Sequences:

>Translated_140_residues
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADEDEYGDDGEFFDDEDEEEPRVH
>Mature_139_residues
SKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEVE
LKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADEDEYGDDGEFFDDEDEEEPRVH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=56.5217391304348, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 16092; Mature: 15960

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADED
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKEILPLLEKHNGIYDGWGTYFEDPNADED
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]