Click here to switch to the map view.

The map label for this gene is yceD [C]

Identifier: 148827300

GI number: 148827300

Start: 631851

End: 632354

Strand: Reverse

Name: yceD [C]

Synonym: CGSHiGG_03395

Alternate gene names: 148827300

Gene position: 632354-631851 (Counterclockwise)

Preceding gene: 148827301

Following gene: 148827299

Centisome position: 33.51

GC content: 41.87

Gene sequence:

>504_bases
ATGCAAAAGGTAAAACTACCCCTAACCGTTGATCCAGTAAAAGATGCTCAAAGACGGCTTGATTATGTTGGTTATTATTC
GGCAAATCAGCTTGAGCGTTTGGCGGAATCAGTGGTAAACGTGCTCAGCGATGCACAGGTAACATTATCGTTTTATGTTG
ATCCACAAAAATTAGTGGTGATGAAAGGTAAAGTACAGATTGATATCGAGCTTGAATGTCAGCGTTGTAACGAACCTTAC
AAACAAACATTGGAATGTGAGTTTACTTATAGTCCAGTGGCTAATTGGGATCAGGCTGATGACTTGCCCGAAATTTATGA
GCCAATCGAGTTCAATGAGTTTGGCGAAATAGATTTAATTGGCACGGTGGAAGATGAGCTAATTTTAGCTTTGCCGCTTG
TCCCAATGCATTCATCTGAACACTGTGAAGTGTCCGCGCAGGAACAGGTTTTTGGCGAATTGCCTGAAGAATTGGCAAAA
AACCGAACCCGTTCGCTGTATTAG

Upstream 100 bases:

>100_bases
AACTTTTTTGGTAATTAGAAATTTTTCTCTCGTTATTATCCAATAAAAAATGTGATTTCCCTTTGACTATCTTCGCAACA
ACAGGTAATATTCACGCCCT

Downstream 100 bases:

>100_bases
CTAATTTAAAGCAAAAGTAAATTAAATTTAGGAGTATAGCCAATGGCTGTTCAACAAAACAAAAAATCTCGTTCACGTCG
TGATATGCGTCGTTCACACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MQKVKLPLTVDPVKDAQRRLDYVGYYSANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDIELECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGELPEELAK
NRTRSLY

Sequences:

>Translated_167_residues
MQKVKLPLTVDPVKDAQRRLDYVGYYSANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDIELECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGELPEELAK
NRTRSLY
>Mature_167_residues
MQKVKLPLTVDPVKDAQRRLDYVGYYSANQLERLAESVVNVLSDAQVTLSFYVDPQKLVVMKGKVQIDIELECQRCNEPY
KQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGELPEELAK
NRTRSLY

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yceD [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=160, Percent_Identity=58.75, Blast_Score=201, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19145; Mature: 19145

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPLTVDPVKDAQRRLDYVGYYSANQLERLAESVVNVLSDAQVTLSFYVDPQKLVV
CCCEECCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
MKGKVQIDIELECQRCNEPYKQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLI
EECEEEEEEEEEHHHCCCHHHHCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
GTVEDELILALPLVPMHSSEHCEVSAQEQVFGELPEELAKNRTRSLY
EECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQKVKLPLTVDPVKDAQRRLDYVGYYSANQLERLAESVVNVLSDAQVTLSFYVDPQKLVV
CCCEECCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
MKGKVQIDIELECQRCNEPYKQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGEIDLI
EECEEEEEEEEEHHHCCCHHHHCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
GTVEDELILALPLVPMHSSEHCEVSAQEQVFGELPEELAKNRTRSLY
EECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]