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The map label for this gene is rpiR [C]

Identifier: 148827284

GI number: 148827284

Start: 615490

End: 616356

Strand: Reverse

Name: rpiR [C]

Synonym: CGSHiGG_03305

Alternate gene names: 148827284

Gene position: 616356-615490 (Counterclockwise)

Preceding gene: 148827285

Following gene: 148827283

Centisome position: 32.66

GC content: 37.6

Gene sequence:

>867_bases
ATGGCTAAATCGGGAAATGTGTTAAACAGAATTGGCTTGCTTTACCAGAGTTTAACTAAATCAGAGAAAAAAATTGCTGA
TACGATTTTGCGTTCGCCTGATTTGGTATCGCAATGTCCCCTTTCTGAAATTGCAAAACACTTAGAAGTGGGAGAGGCTA
CGCTTGTCCGTTTTTGTCGAACCGTTGGCTTTAAAGGTTTCAGCGATTTTAAATTAGAGCTTTCTATTGAACTTGCGACG
AAAGATAATCAAGATGAAAGCGTACTTGAAACAGAAATTATGCCAAGTGATGATTCGCTCACTATTGCACAAAAATTGCA
AGCCGCAGTTGCTAATGTAATGGAAGAAACGATTAATTTACTTGATTTAAAACAGCTTGAAGAAGTCGTTAAAGTACTTA
AAAAAGCACGTCGTATTTTTTTATTTGGTGTGGGTTCATCTGGCGTAACGGCGGAAGATGCTAAAAATAAGCTGATGCGT
ATTGGTTTTCAAGTGGATGCTTCAGGTAATAATCATTTTATGTATATGCAGGCAGCATTACTTACGTCTTCTGATGTGGC
AATTGGTTTAAGCCATTCTGGTTATTCTGCTGAAACGGCACATACCATCAAAATTGCAAAACAAAATGGTGCAACAACAG
TGGCATTGACGCATAGTTTGCGTTCCCCCGTGACAGAATATGCTGATTATGTTTTGGTAAATGGTAATAAACAAGGCAAG
TTACAAGGCGATTCTATTGGCACCAAGATCGCACAGCTTTTTGTATTGGATTTAATTTATGCTTTGTTAGTGCAGGGCGA
AGAAGAAATTGCCGCTCAAACTAAACAAAAAACTCTCAATGTAATTCTTGAACAACGTATAAAATAG

Upstream 100 bases:

>100_bases
TGTGAAATTGAATCCGCTAAATTTGGACAAGATGCAGGTTTAATTGGTGCGGCTTATTGGGTAAAAGATGTTTTACTGGA
TAAGCCTGAAGGAACAATTT

Downstream 100 bases:

>100_bases
GAGAAAACTTATGCGTGATTTAAAAGGTATTTTCAGTGCATTATTAGTGTCATTTAATGAAGATGGCACCATTAATGAAA
AAGGTTTACGCCAAATCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MAKSGNVLNRIGLLYQSLTKSEKKIADTILRSPDLVSQCPLSEIAKHLEVGEATLVRFCRTVGFKGFSDFKLELSIELAT
KDNQDESVLETEIMPSDDSLTIAQKLQAAVANVMEETINLLDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMR
IGFQVDASGNNHFMYMQAALLTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK
LQGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK

Sequences:

>Translated_288_residues
MAKSGNVLNRIGLLYQSLTKSEKKIADTILRSPDLVSQCPLSEIAKHLEVGEATLVRFCRTVGFKGFSDFKLELSIELAT
KDNQDESVLETEIMPSDDSLTIAQKLQAAVANVMEETINLLDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMR
IGFQVDASGNNHFMYMQAALLTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK
LQGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK
>Mature_287_residues
AKSGNVLNRIGLLYQSLTKSEKKIADTILRSPDLVSQCPLSEIAKHLEVGEATLVRFCRTVGFKGFSDFKLELSIELATK
DNQDESVLETEIMPSDDSLTIAQKLQAAVANVMEETINLLDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRI
GFQVDASGNNHFMYMQAALLTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGKL
QGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=263, Percent_Identity=27.3764258555133, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788767, Length=251, Percent_Identity=30.2788844621514, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082130, Length=268, Percent_Identity=28.7313432835821, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788159, Length=261, Percent_Identity=29.8850574712644, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31473; Mature: 31341

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSGNVLNRIGLLYQSLTKSEKKIADTILRSPDLVSQCPLSEIAKHLEVGEATLVRFCR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCHHHHHHHHH
TVGFKGFSDFKLELSIELATKDNQDESVLETEIMPSDDSLTIAQKLQAAVANVMEETINL
HHCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAAL
HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEEEH
LTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK
HCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEHHHHHCCHHHHCCEEEEECCCCCC
LQGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKSGNVLNRIGLLYQSLTKSEKKIADTILRSPDLVSQCPLSEIAKHLEVGEATLVRFCR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCHHHHHHHHH
TVGFKGFSDFKLELSIELATKDNQDESVLETEIMPSDDSLTIAQKLQAAVANVMEETINL
HHCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDLKQLEEVVKVLKKARRIFLFGVGSSGVTAEDAKNKLMRIGFQVDASGNNHFMYMQAAL
HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEEEH
LTSSDVAIGLSHSGYSAETAHTIKIAKQNGATTVALTHSLRSPVTEYADYVLVNGNKQGK
HCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEHHHHHCCHHHHCCEEEEECCCCCC
LQGDSIGTKIAQLFVLDLIYALLVQGEEEIAAQTKQKTLNVILEQRIK
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]