Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 148824168

GI number: 148824168

Start: 3345258

End: 3346637

Strand: Reverse

Name: ydcM [C]

Synonym: TBFG_12993

Alternate gene names: 148824168

Gene position: 3346637-3345258 (Counterclockwise)

Preceding gene: 148824169

Following gene: 148824167

Centisome position: 75.64

GC content: 65.87

Gene sequence:

>1380_bases
ATGCCCAAGTTCGAGGTTCCCGATGGCTGGACGGTCCAAGCGTTTCGGTTCACGCTGGACCCGACCGAGGACCAGGCCAA
GGCGCTGGCACGGCATTTCGGTGCTCGTCGCAAGGCATACAACTGGACCGTGGCCACCCTGAAAGCCGACATCCAGGCGT
GGCATGCCAGCGGGACCGTGACAGCGAAACCGTCGCTGCGCGTGCTGCGCAAACGCTGGAACACCGTCAAGGACGACGTG
TGCGTCAACACCGAGACCGGTGTCGCGTGGTGGCCTGAATGCTCAAAAGAGGCCTACGCCGATGGCATCGCGGGTGCGGT
CGAGGCGTACTGGAACTGGCAGACCTCCCGCGCCGGCAAACGCGCCGGTAAACGGGTCGGGTTTCCCCGTTTCAAACGCA
AAGGCCGCGACCAGGATCGAGTGTCGTTCACGACCGGAGCGATGCGTGTGGAACCCGACCGCCGTCACCTCACCCTGCCG
GTCATCGGGACCGTCCGCACGCACGAGAACACCCGCCGTATCGAACGCCTGATCAAGGCCGGTCGGGCGCGAGTATTGGC
GATCTCGGTGCGCCGCAACGGCACTCGTCTGGATGCCAGTGTGCGGGTGCTTGTCCAGCGTCCGCAGCAGCCGAAGGTGG
TGCACCCCGGTTCGCGGGTTGGTGTCGATGTCGGGGTCCGGCGCCTGGCGACGGTCGCCACCGCTGACGGCACGGCGATC
GAGCAGGTTGAGAACCCACGACCGCTCGGCGCCGCGCTGCGCGAGCTACGCCACGTGTGCCGGGCCCGTTCGCGTTGCAC
GAAAGGTTCACGGCGCTACCGTGAGCGCACCACTCAGATTTCCCGGTTGCATCGCCGGGTCAACGATGTCCGCACCCATC
ACCTGCACGTCCTGACGACACGGTTGGCTCAAACCCACGGCCGCATTGTTGTCGAAGGCTTGGACGCGACAGAGATGTTG
CGGCAAAAAGGGTTGCCGGGTGCCCGCGCTCGTCGGCGCGGACTGTCGGATGCGGCCCTGGGCACTCCGCGTCGGCACTT
GTCCTACAAGACAGTCTGGTACGGGTCGGCGCTGGTGGTCGCCGACCGCTGGTTCCCGTCGTCGAAAACCTGCCACGCCT
GCCGGCATGTGCAAGACATCGGCTGGGACGAACAATGGCAATGCGACCGATGCTCAGTGGTCCATCAGCGTGATGACTGC
GCTGCCATCAACCTCGCACGCTACGAGGAAACATCCAGCATCGTCGGCCCAGTTGGGGCCGCCGTCAAGCGTGGAGCCGA
CCGTAAGACCGGGCCTCGCCCGGCAGGTGGCTGTGAAGCGCGGAAGGGAAGCAGCCCCAAGGCTGCCGAACAACCCCGAG
ACGGGGTGCAAGTCGCGTGA

Upstream 100 bases:

>100_bases
TGACGTCGATGTGCGCCCGTCTGTATGGCAAACGGGCTGCCGAGAATCGAACCAAGCGCGCATTGGCGGCCGCTGCTGGC
GAGGACCATGAGGCCGCCTG

Downstream 100 bases:

>100_bases
CCACTAAAGATCACTCACTTGCAACGGAGTCCCCGACGCTGCAGCAGCTCGGCGAGTTCGCCGTGATCGACCGGCTGGTG
CGGGGGCGCCGACAACCCGC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDV
CVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLP
VIGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAI
EQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDATEML
RQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVVADRWFPSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDC
AAINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA

Sequences:

>Translated_459_residues
MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDV
CVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLP
VIGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAI
EQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDATEML
RQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVVADRWFPSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDC
AAINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA
>Mature_458_residues
PKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDVC
VNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPV
IGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAIE
QVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDATEMLR
QKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVVADRWFPSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCA
AINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=294, Percent_Identity=26.530612244898, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 51407; Mature: 51276

Theoretical pI: Translated: 11.51; Mature: 11.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTV
CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCCCEE
TAKPSLRVLRKRWNTVKDDVCVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGK
ECCHHHHHHHHHHCCCCCCEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPVIGTVRTHENTRRIERLIKA
HHHCCCCCHHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAI
CCCEEEEEEEECCCCCCCHHHHHEEECCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCHH
EQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAQTHGRIVVEGLDATEMLRQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVV
HHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHCCCCHHHCCCCHHHCEEEEEEECCEEEE
ADRWFPSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGA
EECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTV
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCCCEE
TAKPSLRVLRKRWNTVKDDVCVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGK
ECCHHHHHHHHHHCCCCCCEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPVIGTVRTHENTRRIERLIKA
HHHCCCCCHHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAI
CCCEEEEEEEECCCCCCCHHHHHEEECCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCHH
EQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAQTHGRIVVEGLDATEMLRQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVV
HHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHCCCCHHHCCCCHHHCEEEEEEECCEEEE
ADRWFPSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGA
EECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]