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The map label for this gene is glnR [H]

Identifier: 148824073

GI number: 148824073

Start: 3204922

End: 3205680

Strand: Direct

Name: glnR [H]

Synonym: TBFG_12898

Alternate gene names: 148824073

Gene position: 3204922-3205680 (Clockwise)

Preceding gene: 148824066

Following gene: 148824075

Centisome position: 72.44

GC content: 63.11

Gene sequence:

>759_bases
ATGCCTACGGGCCCCACGACGGGGAAGTGGCACCCTCATGAAGTTTGGAGATATCTCTTGGAAGTTCTACTTCTTACCGA
TGAAGCCGATCTTGAATCGGCTCTGCCGGAGCTGGAGTCGTTCGCGCAGTCGGTGCAGCGCGCACCGCTGGACGACCCGG
GCGCGGCCAAGGGTGCGGACGCCGATGTCGCGATCATTGACGCGCGCGCCGACTTGGCGGCCGCTCGCCGGGTGTGCCGC
CGGCTGACGACTAGCGCACCAGCCCTTGCCGTGGTGGCTGTTGTTGCGCCGGCCAACTTTGTGGCAGTGGACGGCGATTG
GATATTCGATGACGTGCTGTTGAACGCGGCCGGCGGGGCCGAGCTGCAGGCACGGTTGCGGTTGGCGATCACACGTCGAC
GGAGCACGCTAGCGGGCACACTGCAATTCGGGGACCTCGTCCTTCACCCAGCCAGCTACACCGCGTCGCTGGGCGACCGG
GACCTGGGGCTGACGCTCACCGAATTCAAACTCATGAATTTCCTTGTGCAGCATGCCGGTCGGGCGTTCACCCGGACTCG
GCTCATGCGTGAGGTGTGGGGCTATGAGTGCCATGGTCGCATTCGTACCGTCGATGTTCACGTACGACGACTGCGCGCAA
AGCTCGGAGCCGAGCACGAATCGATGATCGACACCGTTCGCGGTGTGGGTTATATGGCGGTGACGCCACCGCAGCCGCGC
TGGATCATCAGCGAATCGATACTAAACCGTTGCAAGTGA

Upstream 100 bases:

>100_bases
TCGACTATCTCAAGGTGTGAGCATCGCTCGAGCAACAAAGTTGGAATAGTTCTGTTCTGAACCGGGTACCCAGGGGTACC
GGCAGACATCTCCGCGAGGG

Downstream 100 bases:

>100_bases
GTGATCTTTAGTGGTCACTTGACTTGCACCCCGTCTCGGGGTTGTTCGCCGGCCGGGTGGCCGGTTGCCTTCCGCGCTTC
ACGGCCACCCGCCGGGCCAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR
RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDR
DLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
WIISESILNRCK

Sequences:

>Translated_252_residues
MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR
RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDR
DLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
WIISESILNRCK
>Mature_251_residues
PTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRR
LTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRD
LGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRW
IISESILNRCK

Specific function: Activates the transcription of the glnA gene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786599, Length=125, Percent_Identity=39.2, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082012, Length=126, Percent_Identity=36.5079365079365, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786784, Length=129, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367329, Length=137, Percent_Identity=35.7664233576642, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789809, Length=168, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789402, Length=122, Percent_Identity=31.9672131147541, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790552, Length=129, Percent_Identity=31.0077519379845, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27713; Mature: 27582

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA
CCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCH
ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG
HHHHHHHHHHHHHHHHHHHHEECCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
HHHHHHHHHHHHHCEECCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCC
WIISESILNRCK
CHHHHHHHHHCC
>Mature Secondary Structure 
PTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA
CCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCH
ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG
HHHHHHHHHHHHHHHHHHHHEECCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
HHHHHHHHHHHHHCEECCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCC
WIISESILNRCK
CHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7688332; 12000953 [H]