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The map label for this gene is csd [H]

Identifier: 148663564

GI number: 148663564

Start: 4151194

End: 4152366

Strand: Reverse

Name: csd [H]

Synonym: MRA_3736

Alternate gene names: 148663564

Gene position: 4152366-4151194 (Counterclockwise)

Preceding gene: 148663565

Following gene: 148663561

Centisome position: 93.95

GC content: 70.42

Gene sequence:

>1173_bases
ATGAGGAGAAGCGGCGCAAACAGCCCCGCCGGCGATTCGCTGGCCGACCGATGGCGGGCAGCGCGCCCGCCCGTCGCGGG
GCTACACCTGGACAGCGCGGCCTGTTCGCGCCAGAGTTTCGCCGCACTCGACGCCGCAGCCCAGCACGCGCGGCACGAGG
CCGAGGTTGGCGGTTATGTCGCGGCTGAGGCCGCCGCCGCCGTGCTCGACGCCGGACGTGCGGCGGTCGCCGCACTGAGC
GGCCTGCCCGACGCCGAGGTGGTGTTCACCACCGGCTCGCTGCACGCGTTGGATCTGCTGCTGGGCAGCTGGCCTGGGGA
GAACCGGACGCTGGCTTGCTTGCCCGGCGAATACGGGCCGAACCTGGCTGTGATGGCCGCCCATGGCTTCGACGTGCGTC
CGTTACCAACTCTGCAGGACGGCAGGGTAGCGCTCGACGACGCGGCCTTCATGTTGGCCGACGACCCGCCCGACCTAGTG
CACCTGACCGTGGTGGCCAGCCACCGTGGCGTCGCACAGCCGCTGGCGATGGTGGCGCAACTGTGCACCGAGCTGAAACT
GCCGCTGGTCGTGGATGCCGCGCAGGGCCTGGGCCACGTGGATTGTGCGGTGGGTGCCGACGTCACGTATGCCTCGTCGC
GCAAGTGGATCGCCGGGCCCCGCGGAGTTGGGGTGCTGGCGGTTCGTCCTGAGCTGATGGAGCGGTTACGTGCGAGGCTG
CCCGCGCCAGACTGGATGCCGCCGCTGACAGTGGCCCAACAACTCGGATTTGGCGAAGCCAATGTAGCTGCGCGAGTGGG
GTTTTCGGTCGCACTCGGTGAGCATCTGGCGTGCGGGCCGCAGGCTATTCGGGCACGCTTGGCTGAGCTGGGCGACATCG
CCAGGACCGTACTCGCCGATGTGTCCGGTTGGCGGGTGGTCGAAGCGGTCGACGAGCCTAGCGCGATCACCACCCTGGCG
CCGATCGACGGCGCCGACCCGGCAGCGGTGCGGGCCTGGTTGCTCTCGCAGCGGCGGATCGTGACCACCTACGCCGGAGT
GGAGCGGGCACCGCTGGAACTGCCGGCGCCGGTGCTGCGGATCTCGCCGCACGTGGACAACACCGCCGATGACCTGGACG
CCTTCGCCGAGGCGTTGGTCGCGGCGACCGCGGCGACCAGCGGCGAACGTTAG

Upstream 100 bases:

>100_bases
CGGACTGCATCGCATCCGATGGTGGACCGATGAAGCCGGTGACTTTGGCCTGTCGCTGGCCGCCAAGTGAGCCGCGCCGG
CGACGATGCAGGACGAAGCG

Downstream 100 bases:

>100_bases
CCTCAGCCGGCCTTGTGGGCGGTGAGTAGATAGGCGGGGAACTTCACCCGACCCTTCTCGTCGTGATCGTATGGCGGGAA
TTCGACTGGCGCTCCGGCCA

Product: pyridoxal-phosphate-dependent transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MRRSGANSPAGDSLADRWRAARPPVAGLHLDSAACSRQSFAALDAAAQHARHEAEVGGYVAAEAAAAVLDAGRAAVAALS
GLPDAEVVFTTGSLHALDLLLGSWPGENRTLACLPGEYGPNLAVMAAHGFDVRPLPTLQDGRVALDDAAFMLADDPPDLV
HLTVVASHRGVAQPLAMVAQLCTELKLPLVVDAAQGLGHVDCAVGADVTYASSRKWIAGPRGVGVLAVRPELMERLRARL
PAPDWMPPLTVAQQLGFGEANVAARVGFSVALGEHLACGPQAIRARLAELGDIARTVLADVSGWRVVEAVDEPSAITTLA
PIDGADPAAVRAWLLSQRRIVTTYAGVERAPLELPAPVLRISPHVDNTADDLDAFAEALVAATAATSGER

Sequences:

>Translated_390_residues
MRRSGANSPAGDSLADRWRAARPPVAGLHLDSAACSRQSFAALDAAAQHARHEAEVGGYVAAEAAAAVLDAGRAAVAALS
GLPDAEVVFTTGSLHALDLLLGSWPGENRTLACLPGEYGPNLAVMAAHGFDVRPLPTLQDGRVALDDAAFMLADDPPDLV
HLTVVASHRGVAQPLAMVAQLCTELKLPLVVDAAQGLGHVDCAVGADVTYASSRKWIAGPRGVGVLAVRPELMERLRARL
PAPDWMPPLTVAQQLGFGEANVAARVGFSVALGEHLACGPQAIRARLAELGDIARTVLADVSGWRVVEAVDEPSAITTLA
PIDGADPAAVRAWLLSQRRIVTTYAGVERAPLELPAPVLRISPHVDNTADDLDAFAEALVAATAATSGER
>Mature_390_residues
MRRSGANSPAGDSLADRWRAARPPVAGLHLDSAACSRQSFAALDAAAQHARHEAEVGGYVAAEAAAAVLDAGRAAVAALS
GLPDAEVVFTTGSLHALDLLLGSWPGENRTLACLPGEYGPNLAVMAAHGFDVRPLPTLQDGRVALDDAAFMLADDPPDLV
HLTVVASHRGVAQPLAMVAQLCTELKLPLVVDAAQGLGHVDCAVGADVTYASSRKWIAGPRGVGVLAVRPELMERLRARL
PAPDWMPPLTVAQQLGFGEANVAARVGFSVALGEHLACGPQAIRARLAELGDIARTVLADVSGWRVVEAVDEPSAITTLA
PIDGADPAAVRAWLLSQRRIVTTYAGVERAPLELPAPVLRISPHVDNTADDLDAFAEALVAATAATSGER

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=248, Percent_Identity=27.4193548387097, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 40446; Mature: 40446

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSGANSPAGDSLADRWRAARPPVAGLHLDSAACSRQSFAALDAAAQHARHEAEVGGYV
CCCCCCCCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AAEAAAAVLDAGRAAVAALSGLPDAEVVFTTGSLHALDLLLGSWPGENRTLACLPGEYGP
HHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCC
NLAVMAAHGFDVRPLPTLQDGRVALDDAAFMLADDPPDLVHLTVVASHRGVAQPLAMVAQ
CEEEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHH
LCTELKLPLVVDAAQGLGHVDCAVGADVTYASSRKWIAGPRGVGVLAVRPELMERLRARL
HHHHCCCCEEEEHHCCCCCEEECCCCCEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHC
PAPDWMPPLTVAQQLGFGEANVAARVGFSVALGEHLACGPQAIRARLAELGDIARTVLAD
CCCCCCCHHHHHHHCCCCCCCHHHHHCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
VSGWRVVEAVDEPSAITTLAPIDGADPAAVRAWLLSQRRIVTTYAGVERAPLELPAPVLR
CCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEE
ISPHVDNTADDLDAFAEALVAATAATSGER
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRRSGANSPAGDSLADRWRAARPPVAGLHLDSAACSRQSFAALDAAAQHARHEAEVGGYV
CCCCCCCCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AAEAAAAVLDAGRAAVAALSGLPDAEVVFTTGSLHALDLLLGSWPGENRTLACLPGEYGP
HHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCC
NLAVMAAHGFDVRPLPTLQDGRVALDDAAFMLADDPPDLVHLTVVASHRGVAQPLAMVAQ
CEEEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHH
LCTELKLPLVVDAAQGLGHVDCAVGADVTYASSRKWIAGPRGVGVLAVRPELMERLRARL
HHHHCCCCEEEEHHCCCCCEEECCCCCEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHC
PAPDWMPPLTVAQQLGFGEANVAARVGFSVALGEHLACGPQAIRARLAELGDIARTVLAD
CCCCCCCHHHHHHHCCCCCCCHHHHHCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
VSGWRVVEAVDEPSAITTLAPIDGADPAAVRAWLLSQRRIVTTYAGVERAPLELPAPVLR
CCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEE
ISPHVDNTADDLDAFAEALVAATAATSGER
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]