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The map label for this gene is yrdC [C]

Identifier: 148661089

GI number: 148661089

Start: 1458868

End: 1459521

Strand: Direct

Name: yrdC [C]

Synonym: MRA_1309

Alternate gene names: 148661089

Gene position: 1458868-1459521 (Clockwise)

Preceding gene: 148661088

Following gene: 148661090

Centisome position: 33.01

GC content: 66.82

Gene sequence:

>654_bases
TTGACTGAGACGTTCGACTGCGCCGACCCCGAGCAGCGTTCGCGTGGAATCGTCTCTGCGGTAGGGGCAATCAAGGCGGG
CCAACTGGTGGTGATGCCTACGGACACGGTGTATGGGATCGGCGCCGACGCCTTCGACAGCTCCGCGGTGGCCGCGTTGC
TGTCGGCAAAGGGGCGGGGTCGCGATATGCCGGTAGGTGTGCTGGTCGGCTCTTGGCACACGATCGAGGGGCTGGTCTAC
TCTATGCCCGACGGTGCCCGCGAACTGATTCGCGCATTCTGGCCCGGCGCGCTCAGCCTGGTGGTCGTGCAAGCGCCGTC
GCTGCAATGGGATCTTGGCGATGCCCATGGCACCGTGATGCTGCGAATGCCGCTGCACCCGGTCGCCATCGAGTTGTTGC
GTGAGGTGGGTCCGATGGCGGTATCCAGCGCCAACATCTCGGGCCACCCACCCCCGGTCGACGCCGAACAGGCACGCTCT
CAACTCGGCGACCACGTCGCGGTCTATCTCGACGCGGGTCCATCCGAACAGCAGGCCGGCTCCACGATCGTCGATCTGAC
CGGAGCCACCCCACGCGTCCTGCGGCCGGGGCCGGTCAGCACCGAGCGGATCGCCGAGGTACTTGGTGTGGACGCGGCCA
GCTTGTTCGGCTAG

Upstream 100 bases:

>100_bases
GGCGATGAGGTGGGGGCACCTCCCGCTTGCAGGGGAGAACGGCGCCATTGACCCGCGCCAGCGACGATGCAGAGCGAAGC
GATGAGGAGAAGCGGCGCCA

Downstream 100 bases:

>100_bases
CCGCCGAACGTGCACGCACTGCGAAGATTCGGCCAATTGTTCGCAGCTGTTGCACGTTCGGCGAGTGTTCAGCTCTCAGG
TTGGTGCAGTACGGTCTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVY
SMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARS
QLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRPGPVSTERIAEVLGVDAASLFG

Sequences:

>Translated_217_residues
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVY
SMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARS
QLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRPGPVSTERIAEVLGVDAASLFG
>Mature_216_residues
TETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYS
MPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQ
LGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRPGPVSTERIAEVLGVDAASLFG

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Homo sapiens, GI58761510, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI2367210, Length=152, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=197, Percent_Identity=29.9492385786802, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=226, Percent_Identity=31.4159292035398, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI78707274, Length=177, Percent_Identity=32.7683615819209, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1301_MYCTU (Q10618)

Other databases:

- EMBL:   BX842576
- EMBL:   AE000516
- PIR:   A70774
- RefSeq:   NP_215817.1
- RefSeq:   NP_335788.1
- ProteinModelPortal:   Q10618
- SMR:   Q10618
- EnsemblBacteria:   EBMYCT00000003315
- EnsemblBacteria:   EBMYCT00000069301
- GeneID:   886970
- GeneID:   924728
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1340
- KEGG:   mtu:Rv1301
- TIGR:   MT1340
- TubercuList:   Rv1301
- GeneTree:   EBGT00050000016158
- HOGENOM:   HBG738264
- OMA:   KHRGPDM
- ProtClustDB:   CLSK791088
- GO:   GO:0040007
- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10
- TIGRFAMs:   TIGR00057

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 22571; Mature: 22440

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRG
CCCCCCCCCHHHHHCHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDMPVGVLVGSWHTIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVM
CCCCEEEEEECCEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAG
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCHHHCC
STIVDLTGATPRVLRPGPVSTERIAEVLGVDAASLFG
CEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
TETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRG
CCCCCCCCHHHHHCHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDMPVGVLVGSWHTIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVM
CCCCEEEEEECCEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAG
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCHHHCC
STIVDLTGATPRVLRPGPVSTERIAEVLGVDAASLFG
CEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036