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The map label for this gene is ydcM [C]

Identifier: 148660376

GI number: 148660376

Start: 703326

End: 704069

Strand: Direct

Name: ydcM [C]

Synonym: MRA_0613

Alternate gene names: 148660376

Gene position: 703326-704069 (Clockwise)

Preceding gene: 148660375

Following gene: 148660377

Centisome position: 15.91

GC content: 66.53

Gene sequence:

>744_bases
ATGCCGCGTTTGGAGATCCCCAACGGCTGGTGTGTGCAAGCGTTCCGGTTCACACTCGATCCGACCGCCGAGCAGGCACA
CGCGTTGGCGCGGCATTTCGGCGCCCGCCGCAAGGCCTACAACTGGACCGTCGCGCAGCTGAAAGCCGATATCCAAGCGT
GGCGCGCGACCGGCGCCCAGACGGCGAAGCCGTCGCTTCGGGTACTGCGGAAACGCTGGAACACGGTGAAAGACGAGGTG
TGTGTCAACGCCGAGACTGGCACCGTGTGGTGGCCGGAATGCTCGAAAGAGGCCTACGCCGACGGGATCGCGGGCGCGGT
CGACGCGTACTGGAACTGGCAGCAGAGGCGTGCTGGCAAGCGCGACGGCAAGAGAATGGGCTTCCCTCGATTCAAGAAGA
AGGGCCGCGACGCCGATCGCGTGTCGTTCACCACGGGTGCGATGCGCGTTGAGCCCGACCGTAGACACCTCACTTTGCCG
GTGATCGGCTGCGTGCGTACGCATGAGAACACCCGCCGCATCGAGCGCCTCATCGCCAAAGACCGGGCGCGGGTGCTGGC
GATCACGGTGCGCCGCAACGGCACCCGGCTGGATGCGAGTGTGCGGGTACTGGTGCAGCGCCCCCAGCAACCCAACGTGG
AACTGCCTGAGTCGCGAATCGGTGTCGACGTGGGTGTTCGTCGTCTGGCCACGGTCGCCACCGCGGACGGCGCATGCTGC
CCGGTCCTGGTGCCAGACGGCTAA

Upstream 100 bases:

>100_bases
ACCTCGATGTGCGCAAGGTTGTATGGCAAACGTGCTGCTCAGAACCGGGCCAAGCGGGCCGTCGCGGCTGCCGCTGTCGA
TGATCATGAGGCGGCCTGAG

Downstream 100 bases:

>100_bases
CGCTGGGCATTATCCCCGAGGGCGGCGCCCATATCGACGTGCCCCGAAAGACCGTGGGCGCCTGGCAAACAGCCGACACC
ATGGGCATCTTCCAGGCCCT

Product: truncated IS1536 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MPRLEIPNGWCVQAFRFTLDPTAEQAHALARHFGARRKAYNWTVAQLKADIQAWRATGAQTAKPSLRVLRKRWNTVKDEV
CVNAETGTVWWPECSKEAYADGIAGAVDAYWNWQQRRAGKRDGKRMGFPRFKKKGRDADRVSFTTGAMRVEPDRRHLTLP
VIGCVRTHENTRRIERLIAKDRARVLAITVRRNGTRLDASVRVLVQRPQQPNVELPESRIGVDVGVRRLATVATADGACC
PVLVPDG

Sequences:

>Translated_247_residues
MPRLEIPNGWCVQAFRFTLDPTAEQAHALARHFGARRKAYNWTVAQLKADIQAWRATGAQTAKPSLRVLRKRWNTVKDEV
CVNAETGTVWWPECSKEAYADGIAGAVDAYWNWQQRRAGKRDGKRMGFPRFKKKGRDADRVSFTTGAMRVEPDRRHLTLP
VIGCVRTHENTRRIERLIAKDRARVLAITVRRNGTRLDASVRVLVQRPQQPNVELPESRIGVDVGVRRLATVATADGACC
PVLVPDG
>Mature_246_residues
PRLEIPNGWCVQAFRFTLDPTAEQAHALARHFGARRKAYNWTVAQLKADIQAWRATGAQTAKPSLRVLRKRWNTVKDEVC
VNAETGTVWWPECSKEAYADGIAGAVDAYWNWQQRRAGKRDGKRMGFPRFKKKGRDADRVSFTTGAMRVEPDRRHLTLPV
IGCVRTHENTRRIERLIAKDRARVLAITVRRNGTRLDASVRVLVQRPQQPNVELPESRIGVDVGVRRLATVATADGACCP
VLVPDG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 27860; Mature: 27729

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLEIPNGWCVQAFRFTLDPTAEQAHALARHFGARRKAYNWTVAQLKADIQAWRATGAQ
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
TAKPSLRVLRKRWNTVKDEVCVNAETGTVWWPECSKEAYADGIAGAVDAYWNWQQRRAGK
CCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCHHHHHHHHHCHHHHHCCC
RDGKRMGFPRFKKKGRDADRVSFTTGAMRVEPDRRHLTLPVIGCVRTHENTRRIERLIAK
CCCCCCCCHHHHHCCCCCCCEEEECCCEEECCCCCEEEEEEHEEECCCHHHHHHHHHHHH
DRARVLAITVRRNGTRLDASVRVLVQRPQQPNVELPESRIGVDVGVRRLATVATADGACC
CCCEEEEEEEECCCCEECHHHEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCEE
PVLVPDG
EEEECCC
>Mature Secondary Structure 
PRLEIPNGWCVQAFRFTLDPTAEQAHALARHFGARRKAYNWTVAQLKADIQAWRATGAQ
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
TAKPSLRVLRKRWNTVKDEVCVNAETGTVWWPECSKEAYADGIAGAVDAYWNWQQRRAGK
CCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCHHHHHHHHHCHHHHHCCC
RDGKRMGFPRFKKKGRDADRVSFTTGAMRVEPDRRHLTLPVIGCVRTHENTRRIERLIAK
CCCCCCCCHHHHHCCCCCCCEEEECCCEEECCCCCEEEEEEHEEECCCHHHHHHHHHHHH
DRARVLAITVRRNGTRLDASVRVLVQRPQQPNVELPESRIGVDVGVRRLATVATADGACC
CCCEEEEEEEECCCCEECHHHEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCEE
PVLVPDG
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]