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The map label for this gene is ybdK [C]

Identifier: 148660198

GI number: 148660198

Start: 521634

End: 522764

Strand: Direct

Name: ybdK [C]

Synonym: MRA_0438

Alternate gene names: 148660198

Gene position: 521634-522764 (Clockwise)

Preceding gene: 148660197

Following gene: 148660199

Centisome position: 11.8

GC content: 63.66

Gene sequence:

>1131_bases
TTGCCTGCCCGCAGGTCGGCCGCCCGAATTGATTTCGCAGGCTCACCGCGGCCCACCCTCGGTGTGGAGTGGGAGTTCGC
GCTCGTTGACTCGCAGACCCGCGATCTGAGCAATGAAGCCACCGCGGTTATCGCCGAAATCGGCGAAAACCCGCGGGTCC
ACAAGGAATTGCTGCGCAACACCGTAGAGATTGTCAGCGGTATCTGCGAATGTACCGCCGAGGCAATGCAGGATCTGCGC
GATACCCTGGGCCCCGCCCGTCAGATCGTGCGCGACCGCGGGATGGAGCTGTTCTGCGCGGGTACCCACCCCTTCGCGCG
GTGGTCGGCCCAGAAGCTCACCGACGCGCCGCGGTACGCGGAGCTGATCAAACGCACCCAGTGGTGGGGCCGGCAGATGC
TGATCTGGGGTGTACACGTGCATGTCGGGATTCGCTCGGCGCACAAAGTGATGCCGATCATGACGTCGCTGCTCAACTAC
TACCCGCATCTGTTGGCGCTCTCGGCCTCATCACCCTGGTGGGGTGGCGAAGACACCGGGTATGCCAGCAACCGGGCGAT
GATGTTCCAGCAGTTGCCCACCGCCGGGCTGCCGTTTCACTTTCAGAGGTGGGCGGAGTTCGAAGGTTTCGTGTACGACC
AGAAGAAGACCGGCATCATCGACCATATGGACGAAATCCGTTGGGATATAAGACCCTCACCCCATCTGGGCACCCTGGAG
GTGCGGATCTGCGATGGCGTGTCCAACCTACGAGAGCTCGGCGCGCTGGTCGCGCTGACGCATTGCCTGATCGTCGATCT
GGACCGCCGCTTGGACGCCGGCGAAACGCTACCGACCATGCCTCCCTGGCACGTCCAGGAGAACAAGTGGCGTGCCGCCC
GCTACGGCCTGGACGCGGTGATCATCTTGGACGCCGACAGCAACGAACGGCTGGTTACCGATGACCTCGCGGATGTGCTG
ACCCGGCTGGAGCCGGTCGCCAAGTCGCTGAACTGTGCCGACGAGCTTGCCGCGGTCTCCGATATCTACCGCGATGGCGC
CTCCTACCAGCGGCAGCTGCGAGTGGCGCAGCAGCATGACGGCGATTTGCGCGCGGTAGTTGACGCGCTGGTTGCCGAGC
TGGTGATTTAG

Upstream 100 bases:

>100_bases
TACGTCCAGGTCAATGGGACTCCGGGTCCCGACGAGACGACGTTGACCACCGGCGACGCCGGCAAGCGGGTGGCGTGCGG
TGTCATTGGTTCCGGCTAGC

Downstream 100 bases:

>100_bases
CCGATGCGGGCTGGCTGAGTGTGACGTCCGCCAGCCGCGAGGAGATTGAGGTTTAGGTGATGGCCGATTTCGCGCCGGTT
GAGTTGGCGATGTTCCCGCT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MPARRSAARIDFAGSPRPTLGVEWEFALVDSQTRDLSNEATAVIAEIGENPRVHKELLRNTVEIVSGICECTAEAMQDLR
DTLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGIRSAHKVMPIMTSLLNY
YPHLLALSASSPWWGGEDTGYASNRAMMFQQLPTAGLPFHFQRWAEFEGFVYDQKKTGIIDHMDEIRWDIRPSPHLGTLE
VRICDGVSNLRELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQENKWRAARYGLDAVIILDADSNERLVTDDLADVL
TRLEPVAKSLNCADELAAVSDIYRDGASYQRQLRVAQQHDGDLRAVVDALVAELVI

Sequences:

>Translated_376_residues
MPARRSAARIDFAGSPRPTLGVEWEFALVDSQTRDLSNEATAVIAEIGENPRVHKELLRNTVEIVSGICECTAEAMQDLR
DTLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGIRSAHKVMPIMTSLLNY
YPHLLALSASSPWWGGEDTGYASNRAMMFQQLPTAGLPFHFQRWAEFEGFVYDQKKTGIIDHMDEIRWDIRPSPHLGTLE
VRICDGVSNLRELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQENKWRAARYGLDAVIILDADSNERLVTDDLADVL
TRLEPVAKSLNCADELAAVSDIYRDGASYQRQLRVAQQHDGDLRAVVDALVAELVI
>Mature_375_residues
PARRSAARIDFAGSPRPTLGVEWEFALVDSQTRDLSNEATAVIAEIGENPRVHKELLRNTVEIVSGICECTAEAMQDLRD
TLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGIRSAHKVMPIMTSLLNYY
PHLLALSASSPWWGGEDTGYASNRAMMFQQLPTAGLPFHFQRWAEFEGFVYDQKKTGIIDHMDEIRWDIRPSPHLGTLEV
RICDGVSNLRELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQENKWRAARYGLDAVIILDADSNERLVTDDLADVLT
RLEPVAKSLNCADELAAVSDIYRDGASYQRQLRVAQQHDGDLRAVVDALVAELVI

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=336, Percent_Identity=28.8690476190476, Blast_Score=161, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_MYCBO (P64694)

Other databases:

- EMBL:   BX248335
- RefSeq:   NP_854104.1
- ProteinModelPortal:   P64694
- SMR:   P64694
- EnsemblBacteria:   EBMYCT00000014679
- GeneID:   1091455
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb0441
- GeneTree:   EBGT00050000015559
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13517
- BioCyc:   MBOV233413:MB0441-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42296; Mature: 42165

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARRSAARIDFAGSPRPTLGVEWEFALVDSQTRDLSNEATAVIAEIGENPRVHKELLRN
CCCCCCCCEEECCCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
TVEIVSGICECTAEAMQDLRDTLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCHHHH
ELIKRTQWWGRQMLIWGVHVHVGIRSAHKVMPIMTSLLNYYPHLLALSASSPWWGGEDTG
HHHHHHHHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
YASNRAMMFQQLPTAGLPFHFQRWAEFEGFVYDQKKTGIIDHMDEIRWDIRPSPHLGTLE
CCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE
VRICDGVSNLRELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQENKWRAARYGLDAV
EEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEE
IILDADSNERLVTDDLADVLTRLEPVAKSLNCADELAAVSDIYRDGASYQRQLRVAQQHD
EEEECCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GDLRAVVDALVAELVI
CHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PARRSAARIDFAGSPRPTLGVEWEFALVDSQTRDLSNEATAVIAEIGENPRVHKELLRN
CCCCCCCEEECCCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
TVEIVSGICECTAEAMQDLRDTLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCHHHH
ELIKRTQWWGRQMLIWGVHVHVGIRSAHKVMPIMTSLLNYYPHLLALSASSPWWGGEDTG
HHHHHHHHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
YASNRAMMFQQLPTAGLPFHFQRWAEFEGFVYDQKKTGIIDHMDEIRWDIRPSPHLGTLE
CCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE
VRICDGVSNLRELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQENKWRAARYGLDAV
EEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEE
IILDADSNERLVTDDLADVLTRLEPVAKSLNCADELAAVSDIYRDGASYQRQLRVAQQHD
EEEECCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GDLRAVVDALVAELVI
CHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972