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The map label for this gene is intR [H]

Identifier: 148652497

GI number: 148652497

Start: 829315

End: 830508

Strand: Direct

Name: intR [H]

Synonym: PsycPRwf_0686

Alternate gene names: 148652497

Gene position: 829315-830508 (Clockwise)

Preceding gene: 148652496

Following gene: 148652498

Centisome position: 27.84

GC content: 41.04

Gene sequence:

>1194_bases
ATGATGGCTAGCATTAGAAGCAGAAATAAGAGGCTTATAGTCGATTTTTATTATATGGGCAAACGCTGTCGGGAGACGAC
AAACCTGATAGATACTCCGGCAAATCGTAAAAAGCTTGAAAGTATTATTTTGAATATGGAAGCCGAAATTAGGTTAGGTA
TTTTTAATTATGCTAAATACTTTCCGAAAAGTGATAAGGCTGCAGAAATGGTGGCTTTGAACGATCGTAAGGAATGTATT
AATACCAACGTTCCTTCCTTCAAGCAGTTCGCAACACTGTGGTTTTCTGAAAAAGAAATTGAGTGGCGCGATACTTACAA
GCGCAAAATACAGGAGATTATTGATATGTATTTGCTTCCTGAGTTTGGTACTAAACCCATTCATCTCATAAAAAAGACAG
ATGTATTAGCCTTCCGTTCATCGCTCGGCAAAGTAACGTACGGAAAAGCTAACAAACATCTGTCAGCGGCACGCATCAAT
TCTATAATGGTACCTTTAGGTATGATACTAAAAGAAGCCGCTAAACGCTATAAGTTTGATAACCCTTATTATGATATCAA
GGCACTCAAACAGCCTAAAACTGATATTCAGCCTCTCACACTGGAGGAGGTTTGGACGTTTATTAATGGCGTGAGGGAGG
ATTATCGCCATTATTATCTGGTGCGATTTTTTACAGGTATGCGTACTAGTGAGATTGATGGGCTGACATGGGATAACGTT
GATTTTAATCGTCGTGAAATTGTCATTAAGCAGGCGTTAGTCAAAGGCAAGATTGTTCCTCCTAAAACACAGGAGTCTTA
TCGTGCTATTCAGATGTCTCCATGGGTCTATGATGCGCTGAAAGAGCAAAAAGAAATCTCCTATAGGCGTTCGGATTATG
TGTTTTGCTCACATACGGGTGAGCCATTGGATTATAACAATGTGAATAAGCGTATTTGGCATCCCACACTTAAAGTTTTA
CGGTTGAAGAAGCGTAACGCCTATCAAACACGCCATACGGCAGCGACTTTGTGGTTGGCGGCAGGTGAGAGTCCTGAGTG
GATAGCCAGTCAAATGGGGCACTCAACGACTAAGATGTTATTTAACACTTATAGTCGCTATGTACCAAATATGACACGGC
AGGATGGTAGCGCTTTTGAGGCGCTCGTAAATCGAAGCCAGATGGCTCAATTATCTACTGACAAGGAGACGTAA

Upstream 100 bases:

>100_bases
GTGGTCGCAAGATTTTATACGTTTGGGAAGAAATTGAAAAAGACATGCGTACTGGTATCACCGGTAGCATCAACGCCATG
GCATTGCAATAAGGAGAAAT

Downstream 100 bases:

>100_bases
AAATGAAAATTATTGATTACGATAAGCTATTTGCCGAGTTTAAGCCTAATGGCTATGTCAGTGAGGATGCCCATACTATC
GCTAATATGTTGATTTATGA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MMASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKYFPKSDKAAEMVALNDRKECI
NTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLPEFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARIN
SIMVPLGMILKEAAKRYKFDNPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNV
DFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTGEPLDYNNVNKRIWHPTLKVL
RLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET

Sequences:

>Translated_397_residues
MMASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKYFPKSDKAAEMVALNDRKECI
NTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLPEFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARIN
SIMVPLGMILKEAAKRYKFDNPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNV
DFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTGEPLDYNNVNKRIWHPTLKVL
RLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET
>Mature_397_residues
MMASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKYFPKSDKAAEMVALNDRKECI
NTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLPEFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARIN
SIMVPLGMILKEAAKRYKFDNPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNV
DFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTGEPLDYNNVNKRIWHPTLKVL
RLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=411, Percent_Identity=24.8175182481752, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46580; Mature: 46580

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKY
CCCCCCCCCCEEEEEHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHH
FPKSDKAAEMVALNDRKECINTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLP
CCCCCCCHHHEEECCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
EFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARINSIMVPLGMILKEAAKRYKFD
CCCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
NPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNV
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCCCCCCCC
DFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTG
CCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHCCCEEEECCCC
EPLDYNNVNKRIWHPTLKVLRLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKML
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHHHHHHHCCHHHHHH
FNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMASIRSRNKRLIVDFYYMGKRCRETTNLIDTPANRKKLESIILNMEAEIRLGIFNYAKY
CCCCCCCCCCEEEEEHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHH
FPKSDKAAEMVALNDRKECINTNVPSFKQFATLWFSEKEIEWRDTYKRKIQEIIDMYLLP
CCCCCCCHHHEEECCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
EFGTKPIHLIKKTDVLAFRSSLGKVTYGKANKHLSAARINSIMVPLGMILKEAAKRYKFD
CCCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
NPYYDIKALKQPKTDIQPLTLEEVWTFINGVREDYRHYYLVRFFTGMRTSEIDGLTWDNV
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCCCCCCCC
DFNRREIVIKQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQKEISYRRSDYVFCSHTG
CCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHCCCEEEECCCC
EPLDYNNVNKRIWHPTLKVLRLKKRNAYQTRHTAATLWLAAGESPEWIASQMGHSTTKML
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHHHHHHHCCHHHHHH
FNTYSRYVPNMTRQDGSAFEALVNRSQMAQLSTDKET
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]