Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
---|---|
Accession | NC_009524 |
Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is 148652104
Identifier: 148652104
GI number: 148652104
Start: 346462
End: 347634
Strand: Direct
Name: 148652104
Synonym: PsycPRwf_0292
Alternate gene names: NA
Gene position: 346462-347634 (Clockwise)
Preceding gene: 148652103
Following gene: 148652106
Centisome position: 11.63
GC content: 47.57
Gene sequence:
>1173_bases ATGAATAAATTGCATTTGCTAAGCACTGCTTTATTTGGATTGTCGACGCTGATCACGTTACCTGCTGTGGCCGCAGAGGG CTATGGCAAGCCATTTGAGGATGGGGGCTACAGCAAAGACGACTGGCAATTGGTCTGTGATAATACGTTAACTTGCCGAG CGGCGGGTTATTCAAGTGAGGATAATCTGGACAGACCGGCTTCAATTTTAATCACGGCGATACCCAAGCAGAGCATCCCG AAAGTTGAGGTGCAGTTTGCAAGCGAAGAAGATGATAACGGCAACAACGAGATTGAGCTGTGGTTAAACGATAAGTTTTA TGGGCAGCTCAGCGCTGGTTCAGATGGGGCAGATGGTGGTGTTTATCAATTAAACCAAAAGCAGGCCCAAGCGCTACTTA GGCGAGCGCGTCAAAATACTAAAATAGACATAGTCGCCGTCTCTAATGTGGGTAGCAAACGTTGGCAAGTTAGCGATAAA GGTATGAGTGCGGTACTGCTTAAATTAGATGAGGCGCAAGGGCGAGTCGGTAACGCATTGGCTTTAGTCAGTCATAGCCA TCTAAATAAACAAGTGCCCAAATCAGCAGTAGCAAAACCCATTATTCATAAAGCGTTCGCCTATGCTGATGCAAAACAAA CGACACTGTCGCCCTCAGCGCGTAACTATTTTAACGCTAATATTGAAAAATGGGTGAGGGTAGACTCTAAACCATTAATG GGCAGCTCAGATGACATGGGGGCGTGTGAACTGGCAAACCCTAAGTCTGAGCAGTCTCAATCTTTTAGGGAGTATGCCAC AGAGGGTCTTGACTGGAGCTTTGAGCGGGTAGATGCCACGCATACGCTGGCCAGTCATTTGTGCTGGCGTGGTGCTTATA ATATGGGATATGGGTATTGGCTAATAGACAATGCCAAACCGAGTTCGCCTCAGCTTATCACCACCTCTGGCTCAGAGTAT TCTGAGGGTGAGATTTGGGCAATTCATAAAGCGCGCGGGATAGGGGACTGTTGGGGACAAAAACAGTGGGTATGGAATGG TCAATCTTTTGTACTTGCCACAGAAGCAACCACAGGTATGTGCCGCGGCTTTGCAGGCGGTGCATGGCAATTACCCACTC ATGTCGCTAAGATTATCGAGCATAACAGTACCCAAGCGTCGATAGCAAATTAG
Upstream 100 bases:
>100_bases TAAAGGGCTTATTGCAACTGCATGTACCGTGCTACAGTTAACATATAAATCAATGCTCGTCGACATCTCTTGTCTAGGCG ACACAACAGGAGCATGCCCT
Downstream 100 bases:
>100_bases CCGGTGACGCTTGGGCTGACTTGAAGTAGGGACTCTAAAGCACCCACTTTTCGAACACAACTTCTAGCACCAGCTTTAAT AAAAAGCCGACGAAGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MNKLHLLSTALFGLSTLITLPAVAAEGYGKPFEDGGYSKDDWQLVCDNTLTCRAAGYSSEDNLDRPASILITAIPKQSIP KVEVQFASEEDDNGNNEIELWLNDKFYGQLSAGSDGADGGVYQLNQKQAQALLRRARQNTKIDIVAVSNVGSKRWQVSDK GMSAVLLKLDEAQGRVGNALALVSHSHLNKQVPKSAVAKPIIHKAFAYADAKQTTLSPSARNYFNANIEKWVRVDSKPLM GSSDDMGACELANPKSEQSQSFREYATEGLDWSFERVDATHTLASHLCWRGAYNMGYGYWLIDNAKPSSPQLITTSGSEY SEGEIWAIHKARGIGDCWGQKQWVWNGQSFVLATEATTGMCRGFAGGAWQLPTHVAKIIEHNSTQASIAN
Sequences:
>Translated_390_residues MNKLHLLSTALFGLSTLITLPAVAAEGYGKPFEDGGYSKDDWQLVCDNTLTCRAAGYSSEDNLDRPASILITAIPKQSIP KVEVQFASEEDDNGNNEIELWLNDKFYGQLSAGSDGADGGVYQLNQKQAQALLRRARQNTKIDIVAVSNVGSKRWQVSDK GMSAVLLKLDEAQGRVGNALALVSHSHLNKQVPKSAVAKPIIHKAFAYADAKQTTLSPSARNYFNANIEKWVRVDSKPLM GSSDDMGACELANPKSEQSQSFREYATEGLDWSFERVDATHTLASHLCWRGAYNMGYGYWLIDNAKPSSPQLITTSGSEY SEGEIWAIHKARGIGDCWGQKQWVWNGQSFVLATEATTGMCRGFAGGAWQLPTHVAKIIEHNSTQASIAN >Mature_390_residues MNKLHLLSTALFGLSTLITLPAVAAEGYGKPFEDGGYSKDDWQLVCDNTLTCRAAGYSSEDNLDRPASILITAIPKQSIP KVEVQFASEEDDNGNNEIELWLNDKFYGQLSAGSDGADGGVYQLNQKQAQALLRRARQNTKIDIVAVSNVGSKRWQVSDK GMSAVLLKLDEAQGRVGNALALVSHSHLNKQVPKSAVAKPIIHKAFAYADAKQTTLSPSARNYFNANIEKWVRVDSKPLM GSSDDMGACELANPKSEQSQSFREYATEGLDWSFERVDATHTLASHLCWRGAYNMGYGYWLIDNAKPSSPQLITTSGSEY SEGEIWAIHKARGIGDCWGQKQWVWNGQSFVLATEATTGMCRGFAGGAWQLPTHVAKIIEHNSTQASIAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42639; Mature: 42639
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLHLLSTALFGLSTLITLPAVAAEGYGKPFEDGGYSKDDWQLVCDNTLTCRAAGYSSE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCC DNLDRPASILITAIPKQSIPKVEVQFASEEDDNGNNEIELWLNDKFYGQLSAGSDGADGG CCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC VYQLNQKQAQALLRRARQNTKIDIVAVSNVGSKRWQVSDKGMSAVLLKLDEAQGRVGNAL EEEECHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCEE ALVSHSHLNKQVPKSAVAKPIIHKAFAYADAKQTTLSPSARNYFNANIEKWVRVDSKPLM EEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHEEECCCCCC GSSDDMGACELANPKSEQSQSFREYATEGLDWSFERVDATHTLASHLCWRGAYNMGYGYW CCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE LIDNAKPSSPQLITTSGSEYSEGEIWAIHKARGIGDCWGQKQWVWNGQSFVLATEATTGM EEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHCCCCEEEECCCEEEEEECCCCHH CRGFAGGAWQLPTHVAKIIEHNSTQASIAN HHCCCCCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNKLHLLSTALFGLSTLITLPAVAAEGYGKPFEDGGYSKDDWQLVCDNTLTCRAAGYSSE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCC DNLDRPASILITAIPKQSIPKVEVQFASEEDDNGNNEIELWLNDKFYGQLSAGSDGADGG CCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC VYQLNQKQAQALLRRARQNTKIDIVAVSNVGSKRWQVSDKGMSAVLLKLDEAQGRVGNAL EEEECHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCEE ALVSHSHLNKQVPKSAVAKPIIHKAFAYADAKQTTLSPSARNYFNANIEKWVRVDSKPLM EEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHEEECCCCCC GSSDDMGACELANPKSEQSQSFREYATEGLDWSFERVDATHTLASHLCWRGAYNMGYGYW CCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE LIDNAKPSSPQLITTSGSEYSEGEIWAIHKARGIGDCWGQKQWVWNGQSFVLATEATTGM EEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHCCCCEEEECCCEEEEEECCCCHH CRGFAGGAWQLPTHVAKIIEHNSTQASIAN HHCCCCCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA