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The map label for this gene is ybaV [C]

Identifier: 148652089

GI number: 148652089

Start: 330054

End: 330434

Strand: Direct

Name: ybaV [C]

Synonym: PsycPRwf_0277

Alternate gene names: 148652089

Gene position: 330054-330434 (Clockwise)

Preceding gene: 148652088

Following gene: 148652093

Centisome position: 11.08

GC content: 49.08

Gene sequence:

>381_bases
ATGCGCTATGGGAGCTGGCCAAACAGCATGAATAGGCGTACTAGCGCTTTAATTTTGGGGATGCTGTGCATGATGCAGGC
GGTGTTAATGCCCGGTGCTTGGGCGCAGCAATGCTTTGCCGATGCCCATCAAGCCTATGCACATCTAATAAATGAGCAGC
AAAATCAGCAATTAGCAGAGCAAAGCGTGACGGTTCATTTAAATAGCGCGACCGAAGGTGAACTGACTCAGCTCACCGGT
ATTGGCAGCAATAAAGCGCAGCAAATTATCTTGTATCGAGACGCCTTTGGGCCATTTGGCTCGGTGGATGATTTGGCAAA
GGTAAAAGGCATCGGGGATAAAACCGTTGCCAAAAACCGTGCCCGAATGAGTATAGAGTAG

Upstream 100 bases:

>100_bases
TTGACCTGCGTGCATAAGTTTCGCTCACGCTTTGGATTTATTGAAGCCCAGCTGGCCAAGCAAGGTAAGACGGCACAAAC
CAGCAGTTTAGAGGAGATGG

Downstream 100 bases:

>100_bases
ACCATGCATGGCATTCACCAGATGAGCCGTACTGATATGAGCCTTACTGGCAGACTGCCTGTAATAAGTCATCATCAGCG
GCCAACGGTTGCCATTGCAG

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: Competence Protein ComEA Helix-Hairpin-Helix Repeat Protein; ComE Domain-Containing Protein; Competence Protein; Competence Protein ComEA Helix-Hairpin-Helix Repeat Region; Competence Protein ComEA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MRYGSWPNSMNRRTSALILGMLCMMQAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAEQSVTVHLNSATEGELTQLTG
IGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNRARMSIE

Sequences:

>Translated_126_residues
MRYGSWPNSMNRRTSALILGMLCMMQAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAEQSVTVHLNSATEGELTQLTG
IGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNRARMSIE
>Mature_126_residues
MRYGSWPNSMNRRTSALILGMLCMMQAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAEQSVTVHLNSATEGELTQLTG
IGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNRARMSIE

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13856; Mature: 13856

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYGSWPNSMNRRTSALILGMLCMMQAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVTVHLNSATEGELTQLTGIGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNR
HHEEEEECCCCCCCHHHHCCCCCCCHHEEEEEECCCCCCCCHHHHHHHCCCCCHHHHCCC
ARMSIE
CCCCCC
>Mature Secondary Structure
MRYGSWPNSMNRRTSALILGMLCMMQAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVTVHLNSATEGELTQLTGIGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNR
HHEEEEECCCCCCCHHHHCCCCCCCHHEEEEEECCCCCCCCHHHHHHHCCCCCHHHHCCC
ARMSIE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA