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The map label for this gene is atpD

Identifier: 148652009

GI number: 148652009

Start: 228611

End: 230038

Strand: Direct

Name: atpD

Synonym: PsycPRwf_0193

Alternate gene names: 148652009

Gene position: 228611-230038 (Clockwise)

Preceding gene: 148652008

Following gene: 148652010

Centisome position: 7.67

GC content: 46.15

Gene sequence:

>1428_bases
ATGAGTAGCGGTCGTATAGTACAAATTATTGGCGCAGTTATTGACGTCGAGTTTAACCGCACTGACGTGCCTCAAGTATA
TGATGCATTAGTCGTTGATGGTACTGATACCACACTAGAAGTTCAGCAACAGCTGGGTGACGGTGTTGTACGTACCATTG
CAATGGGATCGACAGAAGGTCTTAAACGCGGTCTACCAGTAACCAATACTGGTGCCCCTATTACCGTACCTGTGGGTGAA
GCCACCTTAGGTCGTATTATGGACGTATTGGGTCGCCCCATTGATGAACAAGGCCCAGTTAATTCTGAAGACAAGTGGTC
TATCCACCGTCAAGCGCCATCATATGATGAGCAAGCTAACAGCACTGACCTTTTAGAAACGGGTATCAAAGTAATTGACT
TACTTTGTCCGTTCGCTAAAGGTGGTAAAGTTGGTCTGTTCGGTGGTGCCGGTGTTGGTAAAACCGTAAACATGATGGAA
TTAATTAACAACATCGCGCTTAAGCACTCAGGTCTATCAGTATTCGCTGGTGTGGGTGAGCGTACTCGTGAAGGTAACGA
CTTCTACCACGAGATGCAAGAAGCGGGCGTTGTTGATGTTGAAAACTTCACCAACTCTAAAGTTGCGATGGTTTACGGTC
AGATGAATGAGCCACCAGGTAACCGTCTACGTGTTGCACTAACTGGTCTAACCATGGCTGAATACTTCCGTGATCAAAAA
GATGAAAACGGTAAAGGTAAAGACGTTCTATTATTCGTTGATAACATCTACCGCTACACACTAGCCGGTACTGAAGTATC
AGCACTATTAGGTCGTATGCCATCAGCGGTAGGTTATCAGCCGACACTAGCTGAAGAGATGGGTGTACTACAAGAGCGTA
TTACATCAACTCAAACGGGTTCTATTACCTCTATCCAAGCGGTATACGTACCTGCGGATGACTTGACCGATCCATCACCA
GCAACGACGTTCGCTCACTTAGACGCGACAGTAGTACTAAGCCGTGATATCGCCTCTCAAGGTATTTACCCTGCGATTGA
TCCACTAGACTCAACTTCTCGTCAGCTAGATCCACTGGTTATCGGTGAAGAGCACTATAACGTTGCTCGTGGTGTTCAGG
AAGTTCTACAGCGCTATAAAGAGCTTAAAGACATCATCGCCATTCTTGGTATGGATGAGCTTTCAGAAGATGACAAAATG
GTGGTATACCGCGCTCGTAAGATCCAGCGCTTCTTATCACAGCCGTTCCACGTGGCAGAAGTATTCACCGGCGCACCTGG
TAAATATGTCACGCTACGTGAAACCATCTCAAGCTTCCGTGATATCTTAGACGGTAAGTATGATAACCTTCCAGAACAAG
CGTTCTACATGGCAGGTGGCATCGATGAAGTGGTTGCTAAAGCTGAGAAAATGAAGTCTGCAGCTTAA

Upstream 100 bases:

>100_bases
GTCAAGCGGCAATTACCCGAGAGATTTCGGAGATTGTCGGCGGTGCTGCTGCTGTTTCCTAATTGACATACCTATATTTT
AGAAGTTCAAGGAGAACGCC

Downstream 100 bases:

>100_bases
TGAGATAGTGCTAAACAGGGTGTGGCATATTTCATATAAAGTATGTCACACTCAGATTAGCGATCAGCTATCGCAATTTA
AGACATTTATATCAAATTAG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSSGRIVQIIGAVIDVEFNRTDVPQVYDALVVDGTDTTLEVQQQLGDGVVRTIAMGSTEGLKRGLPVTNTGAPITVPVGE
ATLGRIMDVLGRPIDEQGPVNSEDKWSIHRQAPSYDEQANSTDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LINNIALKHSGLSVFAGVGERTREGNDFYHEMQEAGVVDVENFTNSKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDQK
DENGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTQTGSITSIQAVYVPADDLTDPSP
ATTFAHLDATVVLSRDIASQGIYPAIDPLDSTSRQLDPLVIGEEHYNVARGVQEVLQRYKELKDIIAILGMDELSEDDKM
VVYRARKIQRFLSQPFHVAEVFTGAPGKYVTLRETISSFRDILDGKYDNLPEQAFYMAGGIDEVVAKAEKMKSAA

Sequences:

>Translated_475_residues
MSSGRIVQIIGAVIDVEFNRTDVPQVYDALVVDGTDTTLEVQQQLGDGVVRTIAMGSTEGLKRGLPVTNTGAPITVPVGE
ATLGRIMDVLGRPIDEQGPVNSEDKWSIHRQAPSYDEQANSTDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LINNIALKHSGLSVFAGVGERTREGNDFYHEMQEAGVVDVENFTNSKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDQK
DENGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTQTGSITSIQAVYVPADDLTDPSP
ATTFAHLDATVVLSRDIASQGIYPAIDPLDSTSRQLDPLVIGEEHYNVARGVQEVLQRYKELKDIIAILGMDELSEDDKM
VVYRARKIQRFLSQPFHVAEVFTGAPGKYVTLRETISSFRDILDGKYDNLPEQAFYMAGGIDEVVAKAEKMKSAA
>Mature_474_residues
SSGRIVQIIGAVIDVEFNRTDVPQVYDALVVDGTDTTLEVQQQLGDGVVRTIAMGSTEGLKRGLPVTNTGAPITVPVGEA
TLGRIMDVLGRPIDEQGPVNSEDKWSIHRQAPSYDEQANSTDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIALKHSGLSVFAGVGERTREGNDFYHEMQEAGVVDVENFTNSKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDQKD
ENGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTQTGSITSIQAVYVPADDLTDPSPA
TTFAHLDATVVLSRDIASQGIYPAIDPLDSTSRQLDPLVIGEEHYNVARGVQEVLQRYKELKDIIAILGMDELSEDDKMV
VYRARKIQRFLSQPFHVAEVFTGAPGKYVTLRETISSFRDILDGKYDNLPEQAFYMAGGIDEVVAKAEKMKSAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=67.7966101694915, Blast_Score=649, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=410, Percent_Identity=25.609756097561, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913424, Length=328, Percent_Identity=28.0487804878049, Blast_Score=109, Evalue=7e-24,
Organism=Homo sapiens, GI19913426, Length=410, Percent_Identity=24.8780487804878, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI50345984, Length=316, Percent_Identity=26.2658227848101, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4757810, Length=316, Percent_Identity=26.2658227848101, Blast_Score=101, Evalue=1e-21,
Organism=Escherichia coli, GI1790170, Length=473, Percent_Identity=76.1099365750529, Blast_Score=738, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=339, Percent_Identity=31.5634218289086, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI1790172, Length=353, Percent_Identity=24.929178470255, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=472, Percent_Identity=67.1610169491525, Blast_Score=642, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=328, Percent_Identity=29.5731707317073, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=363, Percent_Identity=25.8953168044077, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=361, Percent_Identity=26.5927977839335, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=383, Percent_Identity=25.3263707571802, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=383, Percent_Identity=25.3263707571802, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=416, Percent_Identity=22.8365384615385, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=66.0215053763441, Blast_Score=636, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=418, Percent_Identity=25.8373205741627, Blast_Score=113, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=389, Percent_Identity=25.4498714652956, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=221, Percent_Identity=28.0542986425339, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24638766, Length=475, Percent_Identity=66.3157894736842, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=474, Percent_Identity=63.0801687763713, Blast_Score=593, Evalue=1e-170,
Organism=Drosophila melanogaster, GI281361666, Length=408, Percent_Identity=26.7156862745098, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646341, Length=408, Percent_Identity=26.7156862745098, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17136796, Length=408, Percent_Identity=26.7156862745098, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583988, Length=358, Percent_Identity=26.2569832402235, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583986, Length=358, Percent_Identity=26.2569832402235, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583984, Length=358, Percent_Identity=26.2569832402235, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583992, Length=328, Percent_Identity=27.7439024390244, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI20129479, Length=327, Percent_Identity=27.82874617737, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24658560, Length=316, Percent_Identity=25.6329113924051, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=52.1739130434783, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_PSYWF (A5WBW1)

Other databases:

- EMBL:   CP000713
- RefSeq:   YP_001279102.1
- ProteinModelPortal:   A5WBW1
- SMR:   A5WBW1
- STRING:   A5WBW1
- GeneID:   5206315
- GenomeReviews:   CP000713_GR
- KEGG:   prw:PsycPRwf_0193
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   PSP56811:PSYCPRWF_0193-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 51661; Mature: 51530

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGRIVQIIGAVIDVEFNRTDVPQVYDALVVDGTDTTLEVQQQLGDGVVRTIAMGSTEG
CCCCCEEEEEEEHHEEECCCCCCHHHHHEEEECCCCCHHHHHHHHCCHHHHHHCCCCHHH
LKRGLPVTNTGAPITVPVGEATLGRIMDVLGRPIDEQGPVNSEDKWSIHRQAPSYDEQAN
HHCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIALKHSGLSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
RTREGNDFYHEMQEAGVVDVENFTNSKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDQK
CCCCCCHHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHCC
DENGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTQTG
CCCCCCCEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASQGIYPAIDPLDSTSRQLDPLV
CCEEEEEEEECCCCCCCCCCCCEEECCCEEEEEEHHHHHCCCCCCCCCCCCCHHHCCCEE
IGEEHYNVARGVQEVLQRYKELKDIIAILGMDELSEDDKMVVYRARKIQRFLSQPFHVAE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCCEEHH
VFTGAPGKYVTLRETISSFRDILDGKYDNLPEQAFYMAGGIDEVVAKAEKMKSAA
HHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGRIVQIIGAVIDVEFNRTDVPQVYDALVVDGTDTTLEVQQQLGDGVVRTIAMGSTEG
CCCCEEEEEEEHHEEECCCCCCHHHHHEEEECCCCCHHHHHHHHCCHHHHHHCCCCHHH
LKRGLPVTNTGAPITVPVGEATLGRIMDVLGRPIDEQGPVNSEDKWSIHRQAPSYDEQAN
HHCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIALKHSGLSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
RTREGNDFYHEMQEAGVVDVENFTNSKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDQK
CCCCCCHHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHCC
DENGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTQTG
CCCCCCCEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASQGIYPAIDPLDSTSRQLDPLV
CCEEEEEEEECCCCCCCCCCCCEEECCCEEEEEEHHHHHCCCCCCCCCCCCCHHHCCCEE
IGEEHYNVARGVQEVLQRYKELKDIIAILGMDELSEDDKMVVYRARKIQRFLSQPFHVAE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCCEEHH
VFTGAPGKYVTLRETISSFRDILDGKYDNLPEQAFYMAGGIDEVVAKAEKMKSAA
HHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA