Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
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Accession | NC_009524 |
Length | 2,978,976 |
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The map label for this gene is 148651899
Identifier: 148651899
GI number: 148651899
Start: 100375
End: 101655
Strand: Direct
Name: 148651899
Synonym: PsycPRwf_0082
Alternate gene names: NA
Gene position: 100375-101655 (Clockwise)
Preceding gene: 148651898
Following gene: 148651900
Centisome position: 3.37
GC content: 51.29
Gene sequence:
>1281_bases ATGACCTGCGATAGCAAACATCCCCCAACTGATTCACTGTCTTATCAACAAAAGCGGGTAGAGCTGCCCAGAGGCACGCT TGACTTAAGCTATCGGCTAAGTGGTGAGCACAGCTATCAGCTTGATGACCTGCTGGGATTTGCGCAGCGTATCAATCCGA AGCGGGCGTTTTTGTTTGTCTCCAAAGTACTGGGTCGACATATTCCGGTATCGCCCCAGATCATGCGCCAAGCTTTTAGC CATTTGGCTCATACGGTGCCGGATAATTTGCCTGAGCCGATAGTGGTGGTGGGTATGGCTGAGACCGCAGTGGGACTGTC AGCAGGCGTGCATCAAGCGTTACAGGCACGTTATCCCAATGCGTTGCTGCTCAACTCCACCCGTCATGCTCAGCAGCAAG CAAGCCTACTGACCACCTTTAGTGAGGACCATAGCCATGCGAGCACCCATCTGATTTATCAAAGCGATGAGCCGCACATA CAGGCGCAGCTAATGGCCAGTAAGACTTTGATTATGGTGGATGATGAAGCCTCAACCGGAAATACTTGTGTCAATGTGGT CAGTGCCTTACGAGAGGCGGGGCTCACTGAGCTTGAGCAGGTACATTTGGTAACTTTGGTGGATTGGTCGTTAGGACAAG CAGACAATGATGACCATATCGCTCTTCGCTTAGAAGGGATAGCCTTTGAGCGTCATCACTTGATGGCTGGCGACTGGCAA TGGACCGATGCGCCCGATCCACAGCCGATTACTATGCCCAGTGTCGATACCACTGACGCCGGCAGTCAGCCGCTGTTAGC AACTGGCAACTGGGGGCGTCAACCTACCTTAGACAGCACCGAGGGCTTTGCTCATTTTTTAGCACGCTTTAAGCAGGCTT ACCAAAGAGCACGTGGCATTGATGTGGTCAGCGATCCGTTTATTAAGGATAGCGGCACCACTGATAATGCTCAGTCTACG CGAATTTTGGTGCTGGGAAGTAATGAGTTTGTGTGGTTGCCTTTTTTGTTGGCAGAGTGGATAGAGCAGCAGGCGCTGAC GACATCACAAAGCCGTGCACAGGTGAGCTTTAGCGCTTTGACCCGATCACCGATTGCTTTGGGCGGTGCCATTGACGCAG TACTAAGCTTCCAAGATAATTATGGCCTAGGTATGACCAACTTTGTGTATAACGTGGTCCCTGAGCAGTGGGATATTATT GTGCTGTGTGTCGAGACACCCACTGAGAGTGTCGATGCGCTGTGGCATAACTTAGATAACGTGATTGTGGTGAGTCCCTA A
Upstream 100 bases:
>100_bases AATTGATCATTGATAATTTGTAATACCTGACCCATTACGGCGCCGGATGCACGCATCATATAATTCGTGTATTACAGAGC GCCAAAGGAAAGTTTTGACC
Downstream 100 bases:
>100_bases CGATGACGATCAATACCCATAGCTTAACGCCCTTTATGCCCGACTCGTTAATCATCAAGCCTTATGCATTGATGGATTTG GATGACACCTTATTTCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MTCDSKHPPTDSLSYQQKRVELPRGTLDLSYRLSGEHSYQLDDLLGFAQRINPKRAFLFVSKVLGRHIPVSPQIMRQAFS HLAHTVPDNLPEPIVVVGMAETAVGLSAGVHQALQARYPNALLLNSTRHAQQQASLLTTFSEDHSHASTHLIYQSDEPHI QAQLMASKTLIMVDDEASTGNTCVNVVSALREAGLTELEQVHLVTLVDWSLGQADNDDHIALRLEGIAFERHHLMAGDWQ WTDAPDPQPITMPSVDTTDAGSQPLLATGNWGRQPTLDSTEGFAHFLARFKQAYQRARGIDVVSDPFIKDSGTTDNAQST RILVLGSNEFVWLPFLLAEWIEQQALTTSQSRAQVSFSALTRSPIALGGAIDAVLSFQDNYGLGMTNFVYNVVPEQWDII VLCVETPTESVDALWHNLDNVIVVSP
Sequences:
>Translated_426_residues MTCDSKHPPTDSLSYQQKRVELPRGTLDLSYRLSGEHSYQLDDLLGFAQRINPKRAFLFVSKVLGRHIPVSPQIMRQAFS HLAHTVPDNLPEPIVVVGMAETAVGLSAGVHQALQARYPNALLLNSTRHAQQQASLLTTFSEDHSHASTHLIYQSDEPHI QAQLMASKTLIMVDDEASTGNTCVNVVSALREAGLTELEQVHLVTLVDWSLGQADNDDHIALRLEGIAFERHHLMAGDWQ WTDAPDPQPITMPSVDTTDAGSQPLLATGNWGRQPTLDSTEGFAHFLARFKQAYQRARGIDVVSDPFIKDSGTTDNAQST RILVLGSNEFVWLPFLLAEWIEQQALTTSQSRAQVSFSALTRSPIALGGAIDAVLSFQDNYGLGMTNFVYNVVPEQWDII VLCVETPTESVDALWHNLDNVIVVSP >Mature_425_residues TCDSKHPPTDSLSYQQKRVELPRGTLDLSYRLSGEHSYQLDDLLGFAQRINPKRAFLFVSKVLGRHIPVSPQIMRQAFSH LAHTVPDNLPEPIVVVGMAETAVGLSAGVHQALQARYPNALLLNSTRHAQQQASLLTTFSEDHSHASTHLIYQSDEPHIQ AQLMASKTLIMVDDEASTGNTCVNVVSALREAGLTELEQVHLVTLVDWSLGQADNDDHIALRLEGIAFERHHLMAGDWQW TDAPDPQPITMPSVDTTDAGSQPLLATGNWGRQPTLDSTEGFAHFLARFKQAYQRARGIDVVSDPFIKDSGTTDNAQSTR ILVLGSNEFVWLPFLLAEWIEQQALTTSQSRAQVSFSALTRSPIALGGAIDAVLSFQDNYGLGMTNFVYNVVPEQWDIIV LCVETPTESVDALWHNLDNVIVVSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46975; Mature: 46844
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCDSKHPPTDSLSYQQKRVELPRGTLDLSYRLSGEHSYQLDDLLGFAQRINPKRAFLFV CCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHH SKVLGRHIPVSPQIMRQAFSHLAHTVPDNLPEPIVVVGMAETAVGLSAGVHQALQARYPN HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC ALLLNSTRHAQQQASLLTTFSEDHSHASTHLIYQSDEPHIQAQLMASKTLIMVDDEASTG EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCC NTCVNVVSALREAGLTELEQVHLVTLVDWSLGQADNDDHIALRLEGIAFERHHLMAGDWQ HHHHHHHHHHHHCCCHHHHHEEEEEEEECCCCCCCCCCEEEEEEECEEEECCEEEECCEE WTDAPDPQPITMPSVDTTDAGSQPLLATGNWGRQPTLDSTEGFAHFLARFKQAYQRARGI CCCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DVVSDPFIKDSGTTDNAQSTRILVLGSNEFVWLPFLLAEWIEQQALTTSQSRAQVSFSAL CCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCHHHEEEHHHH TRSPIALGGAIDAVLSFQDNYGLGMTNFVYNVVPEQWDIIVLCVETPTESVDALWHNLDN HCCCCCCCHHHHHHEEECCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCC VIVVSP EEEECC >Mature Secondary Structure TCDSKHPPTDSLSYQQKRVELPRGTLDLSYRLSGEHSYQLDDLLGFAQRINPKRAFLFV CCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHH SKVLGRHIPVSPQIMRQAFSHLAHTVPDNLPEPIVVVGMAETAVGLSAGVHQALQARYPN HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC ALLLNSTRHAQQQASLLTTFSEDHSHASTHLIYQSDEPHIQAQLMASKTLIMVDDEASTG EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCC NTCVNVVSALREAGLTELEQVHLVTLVDWSLGQADNDDHIALRLEGIAFERHHLMAGDWQ HHHHHHHHHHHHCCCHHHHHEEEEEEEECCCCCCCCCCEEEEEEECEEEECCEEEECCEE WTDAPDPQPITMPSVDTTDAGSQPLLATGNWGRQPTLDSTEGFAHFLARFKQAYQRARGI CCCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DVVSDPFIKDSGTTDNAQSTRILVLGSNEFVWLPFLLAEWIEQQALTTSQSRAQVSFSAL CCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCHHHEEEHHHH TRSPIALGGAIDAVLSFQDNYGLGMTNFVYNVVPEQWDIIVLCVETPTESVDALWHNLDN HCCCCCCCHHHHHHEEECCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCC VIVVSP EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA